Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_71

Orthogroup ID

OG0000409

Physical Location & Seq

Genomic Coordinates Reverse (-)

12 .. 1373

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I005700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGACTGTCGAGGAAGTTCGTAAGGCTCAGCGGGCAGAGGGTCCGGCCACAGTCTTGGCCATTGGGACAGCAACTCCTCCCAATTGTGTTGATCAGGCTACCTACCCCGACTACTACTTTCGTATTACCAACAGTGAGCACAAGGTTGAGCTCAAGGAAAAATTCCAGCGCATGTGCGACAAATCCATGATCAAGAAGCGTTACATGTACTTGACTGAAGACATTCTAAAAGAGAACCCAACTATGTGTGAGTACATGGCCCCTTCCCTTGATGCCAGGCAGGACATGGTGGTTGTTGAAATTCCAAAACTCGGCAAAGAAGCTGCCACCAAGGCCATTAAGGAATGGGGCCAGCCCAAGTCCAAAATTACCCATTTGGTCTTTTGCACCACCAGTGGTGTGGACATGCCTGGGGCGGACTACCAGCTCACCAAGCTCTTGGGCCTCCGCCCGTCCGTGAAGCGCCTCATGATGTACCAACAAGGGTGTTTCGCCGGCGGCACGGTGCTCAGGTTGGCCAAGGACTTGGCCGAGAACAACAGGGGTGCTCGTGTTCTCGTTGTGTGCTCGGAGATCACAGCGGTCACCTTCCGTGGGCCCAATGATACCCACCTTGACAGTTTAGTTGGGCCAGGCCTTATTTGGGTGATGGTGCAGCAGCTATTATTGTGGGTTCGGACCCAATTCCCGAGATCGAGAGCCCCTTGTTTGAAGTGGTGTCAGCAGCCC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

244

Amino Acids

27.55

Weight (kDa)

9.06

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13930
fragaria_vesca	FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica	MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica	Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis	pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis	RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata	RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora	Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa	Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha	Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana	Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	34, 419, 451, 501, 584
AcoI	YGGCCR	4 cut(s)	48, 60, 519, 531
AcsI	RAATTY	2 cut(s)	164, 303
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	212, 257, 479
AfiI	CCNNNNNNNGG	3 cut(s)	314, 597, 646
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	302, 715
AjnI	CCWGG	3 cut(s)	278, 412, 634
AluBI	AGCT	5 cut(s)	154, 326, 430, 439, 664
AluI	AGCT	5 cut(s)	154, 326, 430, 439, 664
Alw21I	GWGCWC	5 cut(s)	144, 156, 513, 553, 572
Ama87I	CYCGRG	1 cut(s)	691
ApaI	GGGCCC	1 cut(s)	603
ApeKI	GCWGC	4 cut(s)	326, 658, 661, 727
ApoI	RAATTY	2 cut(s)	164, 303
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	2 cut(s)	174, 468
AspS9I	GGNCC	8 cut(s)	44, 262, 352, 445, 599, 600, 632, 681
AsuHPI	GGTGA	4 cut(s)	16, 424, 580, 661
AvaI	CYCGRG	1 cut(s)	691
AvaII	GGWCC	2 cut(s)	44, 681
BaeGI	GKGCMC	1 cut(s)	603
BalI	TGGCCA	2 cut(s)	62, 521
BanII	GRGCYC	3 cut(s)	156, 603, 706
BauI	CACGAG	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	5 cut(s)	144, 156, 513, 553, 572
BbvI	GCAGC	3 cut(s)	313, 670, 673
BccI	CCATC	1 cut(s)	646
BciT130I	CCWGG	3 cut(s)	280, 414, 636
BclI	TGATCA	2 cut(s)	94, 192
BfoI	RGCGCY	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	5 cut(s)	327, 502, 659, 662, 728
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	5 cut(s)	328, 503, 660, 663, 729
Bme1390I	CCNGG	3 cut(s)	280, 414, 636
Bme18I	GGWCC	2 cut(s)	44, 681
BmeT110I	CYCGRG	1 cut(s)	691
BmgT120I	GGNCC	8 cut(s)	44, 262, 352, 445, 599, 600, 632, 681
BmiI	GGNNCC	5 cut(s)	45, 264, 353, 601, 683
BmrFI	CCNGG	3 cut(s)	280, 414, 636
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	512
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	333, 413, 522, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 597, 646
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	3 cut(s)	280, 414, 636
BseDI	CCNNGG	4 cut(s)	333, 413, 522, 595
BseLI	CCNNNNNNNGG	3 cut(s)	314, 597, 646
BseMII	CTCAG	2 cut(s)	44, 526
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	313, 670, 673
BsgI	GTGCAG	1 cut(s)	677
BsiHKAI	GWGCWC	5 cut(s)	144, 156, 513, 553, 572
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	2 cut(s)	47, 498
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	314, 597, 646
BsmFI	GGGAC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	691
Bsp120I	GGGCCC	1 cut(s)	599
Bsp1286I	GDGCHC	7 cut(s)	144, 156, 513, 553, 572, 603, 706
Bsp143I	GATC	4 cut(s)	94, 192, 576, 695
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	5 cut(s)	34, 419, 451, 501, 584
BspCNI	CTCAG	2 cut(s)	43, 525
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	5 cut(s)	45, 264, 353, 601, 683
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	4 cut(s)	333, 413, 522, 595
BssMI	GATC	4 cut(s)	94, 192, 576, 695
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	2 cut(s)	333, 522
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	3 cut(s)	280, 414, 636
Bst4CI	ACNGT	5 cut(s)	10, 55, 137, 508, 623
BstC8I	GCNNGC	3 cut(s)	36, 356, 499
BstDEI	CTNAG	2 cut(s)	30, 512
BstDSI	CCRYGG	1 cut(s)	595
BstEII	GGTNACC	1 cut(s)	586
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	174, 468
BstKTI	GATC	4 cut(s)	97, 195, 579, 698
BstMBI	GATC	4 cut(s)	94, 192, 576, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 335, 436
BstNI	CCWGG	3 cut(s)	280, 414, 636
BstNSI	RCATGY	3 cut(s)	178, 211, 412
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	3 cut(s)	278, 412, 634
BstSLI	GKGCMC	1 cut(s)	603
BstV1I	GCAGC	3 cut(s)	313, 670, 673
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	4 cut(s)	58, 403, 442, 529
BtgI	CCRYGG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	142, 403
Cac8I	GCNNGC	3 cut(s)	36, 356, 499
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	2 cut(s)	174, 468
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	8 cut(s)	44, 262, 352, 445, 599, 600, 632, 681
Csp6I	GTAC	3 cut(s)	211, 256, 478
CviAII	CATG	7 cut(s)	175, 190, 208, 259, 289, 409, 472
CviQI	GTAC	3 cut(s)	211, 256, 478
DdeI	CTNAG	2 cut(s)	30, 512
DpnI	GATC	4 cut(s)	96, 194, 578, 697
DpnII	GATC	4 cut(s)	94, 192, 576, 695
EaeI	YGGCCR	4 cut(s)	48, 60, 519, 531
EciI	GGCGGA	2 cut(s)	434, 440
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	333, 522
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	3 cut(s)	156, 603, 706
Eco47I	GGWCC	2 cut(s)	44, 681
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	691
Eco91I	GGTNACC	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	3 cut(s)	278, 412, 634
EcoT14I	CCWWGG	2 cut(s)	333, 522
EcoT38I	GRGCYC	3 cut(s)	156, 603, 706
ErhI	CCWWGG	2 cut(s)	333, 522
FaeI	CATG	7 cut(s)	178, 193, 211, 262, 292, 412, 475
FaiI	YATR	8 cut(s)	176, 191, 209, 248, 260, 290, 410, 473
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	7 cut(s)	174, 189, 207, 258, 288, 408, 471
FauI	CCCGC	1 cut(s)	27
FbaI	TGATCA	2 cut(s)	94, 192
Fnu4HI	GCNGC	5 cut(s)	327, 502, 659, 662, 728
FriOI	GRGCYC	3 cut(s)	156, 603, 706
Fsp4HI	GCNGC	5 cut(s)	327, 502, 659, 662, 728
GlaI	GCGC	2 cut(s)	173, 467
GluI	GCNGC	5 cut(s)	327, 502, 659, 662, 728
HaeII	RGCGCY	1 cut(s)	469
HapII	CCGG	2 cut(s)	47, 498
HhaI	GCGC	2 cut(s)	174, 468
Hin1II	CATG	7 cut(s)	178, 193, 211, 262, 292, 412, 475
Hin6I	GCGC	2 cut(s)	172, 466
HinP1I	GCGC	2 cut(s)	172, 466
HpaII	CCGG	2 cut(s)	47, 498
HphI	GGTGA	4 cut(s)	16, 424, 580, 661
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	574, 681
Hpy188III	TCNNGA	4 cut(s)	196, 472, 691, 699
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	276, 601
HpyCH4III	ACNGT	5 cut(s)	10, 55, 137, 508, 623
HpyCH4V	TGCA	2 cut(s)	390, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 335, 436
HpyF3I	CTNAG	2 cut(s)	30, 512
Hsp92II	CATG	7 cut(s)	178, 193, 211, 262, 292, 412, 475
HspAI	GCGC	2 cut(s)	172, 466
KroI	GCCGGC	1 cut(s)	497
KroNI	GCCGGC	1 cut(s)	499
Ksp22I	TGATCA	2 cut(s)	94, 192
Kzo9I	GATC	4 cut(s)	94, 192, 576, 695
Lsp1109I	GCAGC	3 cut(s)	313, 670, 673
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	3 cut(s)	4, 203, 586
MalI	GATC	4 cut(s)	96, 194, 578, 697
MboI	GATC	4 cut(s)	94, 192, 576, 695
MboII	GAAGA	1 cut(s)	233
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	7 cut(s)	144, 156, 513, 553, 572, 603, 706
MlsI	TGGCCA	2 cut(s)	62, 521
MluCI	AATT	5 cut(s)	85, 164, 303, 369, 686
MluNI	TGGCCA	2 cut(s)	62, 521
MnlI	CCTC	5 cut(s)	7, 34, 90, 458, 479
Mox20I	TGGCCA	2 cut(s)	62, 521
MreI	CGCCGGCG	1 cut(s)	497
MroNI	GCCGGC	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	2 cut(s)	62, 521
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	2 cut(s)	62, 521
MspA1I	CMGCKG	2 cut(s)	34, 584
MspI	CCGG	2 cut(s)	47, 498
MspR9I	CCNGG	3 cut(s)	280, 414, 636
MunI	CAATTG	1 cut(s)	85
MvaI	CCWGG	3 cut(s)	280, 414, 636
MwoI	GCNNNNNNNGC	3 cut(s)	35, 335, 436
NaeI	GCCGGC	1 cut(s)	499
NdeII	GATC	4 cut(s)	94, 192, 576, 695
NgoMIV	GCCGGC	1 cut(s)	497
NlaIII	CATG	7 cut(s)	178, 193, 211, 262, 292, 412, 475
NlaIV	GGNNCC	5 cut(s)	45, 264, 353, 601, 683
NmeAIII	GCCGAG	2 cut(s)	294, 559
NmuCI	GTSAC	2 cut(s)	4, 586
NspI	RCATGY	3 cut(s)	178, 211, 412
PagI	TCATGA	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	639
PciI	ACATGT	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	225
PkrI	GCNGC	5 cut(s)	328, 503, 660, 663, 729
PscI	ACATGT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	278, 412, 634
PspEI	GGTNACC	1 cut(s)	586
PspGI	CCWGG	3 cut(s)	278, 412, 634
PspN4I	GGNNCC	5 cut(s)	45, 264, 353, 601, 683
PspOMI	GGGCCC	1 cut(s)	599
PspPI	GGNCC	8 cut(s)	44, 262, 352, 445, 599, 600, 632, 681
RsaI	GTAC	3 cut(s)	212, 257, 479
RsaNI	GTAC	3 cut(s)	211, 256, 478
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	5 cut(s)	327, 502, 659, 662, 728
Sau3AI	GATC	4 cut(s)	94, 192, 576, 695
Sau96I	GGNCC	8 cut(s)	44, 262, 352, 445, 599, 600, 632, 681
ScrFI	CCNGG	3 cut(s)	280, 414, 636
SduI	GDGCHC	7 cut(s)	144, 156, 513, 553, 572, 603, 706
SfaNI	GCATC	1 cut(s)	265
SgrAI	CRCCGGYG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	44, 681
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	5 cut(s)	85, 164, 303, 369, 686
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	5 cut(s)	34, 419, 451, 501, 584
SstI	GAGCTC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	3 cut(s)	278, 412, 634
StyI	CCWWGG	2 cut(s)	333, 522
TaaI	ACNGT	5 cut(s)	10, 55, 137, 508, 623
TaqI	TCGA	2 cut(s)	12, 698
TasI	AATT	5 cut(s)	85, 164, 303, 369, 686
TatI	WGTACW	2 cut(s)	210, 255
TauI	GCSGC	1 cut(s)	504
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	142, 403
TseFI	GTSAC	2 cut(s)	4, 586
TseI	GCWGC	4 cut(s)	326, 658, 661, 727
Tsp45I	GTSAC	2 cut(s)	4, 586
TspGWI	ACGGA	2 cut(s)	448, 584
TspRI	CASTG	2 cut(s)	142, 403
VpaK11BI	GGWCC	2 cut(s)	44, 681
XapI	RAATTY	2 cut(s)	164, 303
XceI	RCATGY	3 cut(s)	178, 211, 412
XcmI	CCANNNNNNNNNTGG	3 cut(s)	286, 400, 642
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.