pycom15g11900

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000409
Physical Location & Seq
Reverse (-)
8060321 .. 8074331
14011 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11900.3

Sequence Viewer

Length: 531 bp
ATGTATGTTCCGCAGGGCAGTGCCATTCATTTTATTGAAACCTTTCGACTCCCCCTCTCTTCCAAGTTTAGCAAATCCCTACTCTATATCTGCTCTTCAACTAGCCCAATGGCGCCTTTGGTTAAGAATCATGGAGAGCCTCAACATGCCAAAATCCTAGCCATTGGCACTGCAAATCCACCAAACGTCTACTACCAAAAAGACTATCCTGATTTCTTGTTTCGAGTCACCAAAAATGAGCACAGGACAGATTTAAGAGAGAAATTTGATCGCATTTGTGAGAAATCAAGAACAAGAAAACGTTACTTACATCTAACAGAGGAGATTCTAAAGGCTAACCCAAGCATATATACCTATGGTGCCCCATCACTCGATGTGCGCCAAGACATGTTGAACCCTGAGGTCCCAAAGCTAGGGCAACAAGCAGCACTGAAAGCCATCAAAGAGTGGGGCCAACCCATCTCAAAGATCACCCACCTCATCTTTTGCACACTTCTTGCGTTGACATGCCAGGTTGTGACTTCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

177

Amino Acids

20.08

Weight (kDa)

9.37

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 112, 359
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 11
AclI AACGTT 1 cut(s) 301
AcsI RAATTY 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 38, 99, 394
AjnI CCWGG 1 cut(s) 510
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
Alw21I GWGCWC 1 cut(s) 243
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 115, 381
AspS9I GGNCC 2 cut(s) 403, 451
AsuHPI GGTGA 2 cut(s) 220, 463
AvaII GGWCC 1 cut(s) 403
AxyI CCTNAGG 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 364
BanI GGYRCC 2 cut(s) 112, 359
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 437
BccI CCATC 3 cut(s) 373, 446, 467
BciT130I CCWGG 1 cut(s) 512
BfaI CTAG 3 cut(s) 102, 158, 413
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 403, 451
BmiI GGNNCC 4 cut(s) 114, 361, 405, 452
BmrFI CCNGG 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse21I CCTNAGG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 1 cut(s) 437
BshFI GGCC 1 cut(s) 453
BshNI GGYRCC 2 cut(s) 112, 359
BsiHKAI GWGCWC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 1 cut(s) 453
Bsp1286I GDGCHC 2 cut(s) 243, 364
Bsp143I GATC 2 cut(s) 268, 468
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 4 cut(s) 114, 361, 405, 452
BspQI GCTCTTC 1 cut(s) 100
BspT107I GGYRCC 2 cut(s) 112, 359
BssMI GATC 2 cut(s) 268, 468
BssNI GRCGYC 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 512
Bst6I CTCTTC 2 cut(s) 64, 100
BstACI GRCGYC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 399
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 381
BstKTI GATC 2 cut(s) 271, 471
BstMBI GATC 2 cut(s) 268, 468
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 3 cut(s) 149, 391, 510
BstSCI CCNGG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 437
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 1 cut(s) 453
BtsI GCAGTG 2 cut(s) 25, 168
BtsIMutI CAGTG 3 cut(s) 25, 168, 428
CfoI GCGC 2 cut(s) 115, 381
Cfr13I GGNCC 2 cut(s) 403, 451
CviAII CATG 4 cut(s) 131, 146, 388, 507
CviJI RGCY 7 cut(s) 105, 139, 161, 335, 412, 437, 453
CviKI_1 RGCY 7 cut(s) 105, 139, 161, 335, 412, 437, 453
DdeI CTNAG 1 cut(s) 399
DinI GGCGCC 1 cut(s) 114
DpnI GATC 2 cut(s) 270, 470
DpnII GATC 2 cut(s) 268, 468
Eam1104I CTCTTC 2 cut(s) 64, 100
EarI CTCTTC 2 cut(s) 64, 100
Eco47I GGWCC 1 cut(s) 403
Eco81I CCTNAGG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 510
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
FaeI CATG 4 cut(s) 134, 149, 391, 510
FaqI GGGAC 1 cut(s) 389
FatI CATG 4 cut(s) 130, 145, 387, 506
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 3 cut(s) 102, 158, 413
GlaI GCGC 2 cut(s) 114, 380
GluI GCNGC 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 453
HhaI GCGC 2 cut(s) 115, 381
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 4 cut(s) 134, 149, 391, 510
Hin6I GCGC 2 cut(s) 113, 379
HinP1I GCGC 2 cut(s) 113, 379
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 4 cut(s) 48, 127, 225, 325
HphI GGTGA 2 cut(s) 220, 463
Hpy166II GTNNAC 2 cut(s) 190, 504
Hpy188III TCNNGA 2 cut(s) 209, 288
Hpy8I GTNNAC 2 cut(s) 190, 504
HpyCH4IV ACGT 2 cut(s) 186, 301
HpyCH4V TGCA 2 cut(s) 173, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 186, 301
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 4 cut(s) 134, 149, 391, 510
HspAI GCGC 2 cut(s) 113, 379
KasI GGCGCC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 268, 468
LguI GCTCTTC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 222, 229, 411, 497, 524
Lsp1109I GCAGC 1 cut(s) 437
MaeI CTAG 3 cut(s) 102, 158, 413
MaeII ACGT 2 cut(s) 186, 301
MaeIII GTNAC 3 cut(s) 226, 302, 517
MalI GATC 2 cut(s) 270, 470
MboI GATC 2 cut(s) 268, 468
MboII GAAGA 2 cut(s) 51, 87
MhlI GDGCHC 2 cut(s) 243, 364
MluCI AATT 2 cut(s) 263, 526
Mly113I GGCGCC 1 cut(s) 113
MlyI GAGTC 2 cut(s) 42, 234
MnlI CCTC 5 cut(s) 65, 150, 313, 394, 488
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 3 cut(s) 123, 254, 529
MspR9I CCNGG 1 cut(s) 512
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 434
NarI GGCGCC 1 cut(s) 113
NdeII GATC 2 cut(s) 268, 468
NlaIII CATG 4 cut(s) 134, 149, 391, 510
NlaIV GGNNCC 4 cut(s) 114, 361, 405, 452
NmuCI GTSAC 2 cut(s) 226, 517
NspI RCATGY 3 cut(s) 149, 391, 510
PciI ACATGT 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 127, 325
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 42, 233
PluTI GGCGCC 1 cut(s) 116
PpsI GAGTC 2 cut(s) 42, 233
PpuMI RGGWCCY 1 cut(s) 403
PscI ACATGT 1 cut(s) 387
Psp1406I AACGTT 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 4 cut(s) 114, 361, 405, 452
PspPI GGNCC 2 cut(s) 403, 451
PspPPI RGGWCCY 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 123, 254, 529
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 2 cut(s) 268, 468
Sau96I GGNCC 2 cut(s) 403, 451
SchI GAGTC 2 cut(s) 42, 234
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 2 cut(s) 243, 364
SetI ASST 8 cut(s) 44, 189, 304, 356, 405, 414, 480, 516
SfoI GGCGCC 1 cut(s) 114
SinI GGWCC 1 cut(s) 403
Sse9I AATT 2 cut(s) 263, 526
SsiI CCGC 1 cut(s) 11
SspDI GGCGCC 1 cut(s) 112
SspMI CTAG 3 cut(s) 102, 158, 413
StyD4I CCNGG 1 cut(s) 510
TaiI ACGT 2 cut(s) 189, 304
TaqI TCGA 3 cut(s) 46, 223, 372
TasI AATT 2 cut(s) 263, 526
TfiI GAWTC 2 cut(s) 127, 325
Tru1I TTAA 3 cut(s) 123, 254, 529
Tru9I TTAA 3 cut(s) 123, 254, 529
TscAI CASTG 3 cut(s) 25, 175, 435
TseFI GTSAC 2 cut(s) 226, 517
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 2 cut(s) 226, 517
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 25, 175, 435
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 263
XceI RCATGY 3 cut(s) 149, 391, 510
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 102, 158, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.