Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8031452.1

Orthogroup ID

OG0000409

Physical Location & Seq

Genomic Coordinates Reverse (-)

112 .. 547

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8031452.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 436 bp

tatccttcctgacagtgacggagccatcgacgggcatcttcgtgaagttgggctcacatttcacctcctcaaagatgttcctgggctgatttctaagaacatcgagaagagcctcaacgaggccttcaaacctttgaatatcatggactggaactcactattctggattgcacacccgggtggccctgcaattttggaccaagtagaggctaaattgggcctgaaacccgaaaagttagaagccacaaggcatatattatccgagtatggcaacatgtctagtgcttgtgtgttgtttattttggacgaggtgaggaggaagtctgcagctaaagggcacaagaccactggagaagggctagagtggggtgttctatttgggtttgggcctgggctcaccgtcgagaccgtcgtgcttcacagtgtggctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

144

Amino Acids

15.62

Weight (kDa)

5.84

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13930
fragaria_vesca	FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica	MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica	Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis	pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis	RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata	RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora	Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa	Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha	Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana	Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	31, 119, 206
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	128, 137
AjnI	CCWGG	2 cut(s)	80, 389
AleI	CACNNNNGTG	1 cut(s)	178
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	121, 182, 218, 387
ApeKI	GCWGC	2 cut(s)	327, 429
AspS9I	GGNCC	4 cut(s)	183, 197, 218, 387
AsuC2I	CCSGG	2 cut(s)	177, 178
AsuHPI	GGTGA	3 cut(s)	54, 323, 389
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	340
BanII	GRGCYC	2 cut(s)	55, 397
BbvI	GCAGC	2 cut(s)	339, 416
BccI	CCATC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	82, 391
BcnI	CCSGG	2 cut(s)	177, 178
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	2 cut(s)	280, 360
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	2 cut(s)	328, 430
BlsI	GCNGC	2 cut(s)	329, 431
Bme1390I	CCNGG	4 cut(s)	82, 177, 178, 391
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	4 cut(s)	183, 197, 218, 387
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	4 cut(s)	82, 177, 178, 391
BmsI	GCATC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	370
BpuMI	CCSGG	2 cut(s)	177, 178
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	81, 176, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 119, 206
Bse1I	ACTGG	2 cut(s)	153, 353
BseBI	CCWGG	2 cut(s)	82, 391
BseDI	CCNNGG	3 cut(s)	81, 176, 390
BseLI	CCNNNNNNNGG	3 cut(s)	31, 119, 206
BseNI	ACTGG	2 cut(s)	153, 353
BseRI	GAGGAG	2 cut(s)	57, 329
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	339, 416
BshFI	GGCC	4 cut(s)	123, 184, 220, 389
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	31, 119, 206
BsmAI	GTCTC	1 cut(s)	399
BsnI	GGCC	4 cut(s)	123, 184, 220, 389
Bso31I	GGTCTC	1 cut(s)	399
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	55, 340, 397
BspANI	GGCC	4 cut(s)	123, 184, 220, 389
BspLI	GGNNCC	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	329
BspQI	GCTCTTC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	153, 353
BssECI	CCNNGG	3 cut(s)	81, 176, 390
Bst2UI	CCWGG	2 cut(s)	82, 391
Bst4CI	ACNGT	4 cut(s)	15, 401, 410, 423
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	399
BstNI	CCWGG	2 cut(s)	82, 391
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	4 cut(s)	80, 175, 176, 389
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	339, 416
BsuRI	GGCC	4 cut(s)	123, 184, 220, 389
BtsIMutI	CAGTG	3 cut(s)	20, 346, 428
Cfr13I	GGNCC	4 cut(s)	183, 197, 218, 387
Cfr9I	CCCGGG	1 cut(s)	176
CviAII	CATG	2 cut(s)	143, 275
DdeI	CTNAG	1 cut(s)	94
DraIII	CACNNNGTG	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	55, 397
Eco31I	GGTCTC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	80, 389
EcoT38I	GRGCYC	2 cut(s)	55, 397
FaeI	CATG	2 cut(s)	146, 278
FaiI	YATR	5 cut(s)	144, 253, 255, 268, 276
FatI	CATG	2 cut(s)	142, 274
Fnu4HI	GCNGC	2 cut(s)	328, 430
FriOI	GRGCYC	2 cut(s)	55, 397
Fsp4HI	GCNGC	2 cut(s)	328, 430
FspBI	CTAG	2 cut(s)	280, 360
GluI	GCNGC	2 cut(s)	328, 430
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	4 cut(s)	123, 184, 220, 389
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	146, 278
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	3 cut(s)	54, 323, 389
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	5 cut(s)	9, 42, 104, 164, 404
Hpy99I	CGWCG	3 cut(s)	33, 405, 414
HpyAV	CCTTC	3 cut(s)	15, 134, 348
HpyCH4III	ACNGT	4 cut(s)	15, 401, 410, 423
HpyCH4V	TGCA	3 cut(s)	171, 189, 327
HpyF3I	CTNAG	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	146, 278
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	2 cut(s)	339, 416
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	2 cut(s)	280, 360
MaeIII	GTNAC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	30, 119
MhlI	GDGCHC	3 cut(s)	55, 340, 397
MluCI	AATT	2 cut(s)	190, 213
MnlI	CCTC	8 cut(s)	75, 78, 113, 123, 200, 302, 307, 310
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	40, 178
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	4 cut(s)	82, 177, 178, 391
MvaI	CCWGG	2 cut(s)	82, 391
NciI	CCSGG	2 cut(s)	177, 178
NlaIII	CATG	2 cut(s)	146, 278
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	123
PciI	ACATGT	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	25, 409
PkrI	GCNGC	2 cut(s)	329, 431
PscI	ACATGT	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	80, 389
PspGI	CCWGG	2 cut(s)	80, 389
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	4 cut(s)	183, 197, 218, 387
PstI	CTGCAG	1 cut(s)	329
RseI	CAYNNNNRTG	2 cut(s)	40, 178
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	2 cut(s)	328, 430
Sau96I	GGNCC	4 cut(s)	183, 197, 218, 387
ScrFI	CCNGG	4 cut(s)	82, 177, 178, 391
SduI	GDGCHC	3 cut(s)	55, 340, 397
SetI	ASST	4 cut(s)	67, 134, 313, 332
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	197
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	40, 178
Sse9I	AATT	2 cut(s)	190, 213
SseBI	AGGCCT	1 cut(s)	123
SspMI	CTAG	2 cut(s)	280, 360
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	4 cut(s)	80, 175, 176, 389
TaaI	ACNGT	4 cut(s)	15, 401, 410, 423
TaqI	TCGA	3 cut(s)	28, 103, 403
TasI	AATT	2 cut(s)	190, 213
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	3 cut(s)	20, 353, 428
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	327, 429
Tsp45I	GTSAC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	34
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	3 cut(s)	20, 353, 428
VpaK11BI	GGWCC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	117
XceI	RCATGY	1 cut(s)	278
XmaI	CCCGGG	1 cut(s)	176
XspI	CTAG	2 cut(s)	280, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.