RLG00000007845

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
21887254 .. 21887820
567 bp
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UTR
Exon/CDS
Intron
RLM00000007845

Sequence Viewer

Length: 477 bp
ATGCTCTCAGATTTACCTAAAGCTAGGAAGGTTGAAGTATATTATGTTGGAGGAGGTGATAGAGATGTGGAAGTTTGTGAGAAGGAGGATCAGATTAAAGATTTTTCAGAGTTAGATATTGAAAACAGTGAGGATGAAGAAGTCTTTGAGCATGATGATGATAACGAAACAGCGAAAGAAGAGGTCGATGACAAGTTCTTTGACAGTGATTATGAATTAAACCCCGAGGATGATGGTGAATCATATGGTGTCGAAGCAGATGATGTTGAGTTCAATGCCAATGTCGATGATATAAATGAGATTAAGGAATGGACTGATATGGGATTTACTGGTGAGATATCAGACAATAGTGAAGACAGTGCTGAGTTGTCAAGTGCAAATGAGGAATCTGAAGATAAAGTTAATGATGGTTCAGTCTCAAGTAAAAGGAAAAAGATCAACATTTTAATAATAGATTTCAATTTAAGGAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.04

Weight (kDa)

4.05

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 411
AgsI TTSAA 4 cut(s) 35, 122, 274, 460
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AsuHPI GGTGA 3 cut(s) 68, 248, 344
AvaI CYCGRG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 360
BccI CCATC 2 cut(s) 227, 401
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 139, 235
BseMII CTCAG 2 cut(s) 21, 354
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 224
Bsp143I GATC 2 cut(s) 88, 435
BspCNI CTCAG 2 cut(s) 20, 355
BspPI GGATC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 88, 435
Bst4CI ACNGT 3 cut(s) 128, 206, 359
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 7, 363
BstF5I GGATG 2 cut(s) 139, 235
BstKTI GATC 2 cut(s) 91, 438
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 2 cut(s) 88, 435
BstV2I GAAGAC 1 cut(s) 360
BtsCI GGATG 2 cut(s) 139, 235
BtsIMutI CAGTG 3 cut(s) 133, 211, 364
CviAII CATG 1 cut(s) 152
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
DdeI CTNAG 2 cut(s) 7, 363
DpnI GATC 2 cut(s) 90, 437
DpnII GATC 2 cut(s) 88, 435
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 339
FaeI CATG 1 cut(s) 155
FaiI YATR 8 cut(s) 40, 45, 153, 213, 244, 246, 293, 320
FatI CATG 1 cut(s) 151
FauNDI CATATG 1 cut(s) 244
FokI GGATG 2 cut(s) 146, 242
FspBI CTAG 1 cut(s) 24
Hin1II CATG 1 cut(s) 155
HinfI GANTC 2 cut(s) 239, 386
HphI GGTGA 3 cut(s) 68, 248, 344
Hpy188I TCNGA 5 cut(s) 10, 93, 109, 343, 391
HpyAV CCTTC 2 cut(s) 22, 76
HpyCH4III ACNGT 3 cut(s) 128, 206, 359
HpyCH4V TGCA 1 cut(s) 377
HpyF3I CTNAG 2 cut(s) 7, 363
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 2 cut(s) 88, 435
LpnPI CCDG 1 cut(s) 315
MaeI CTAG 1 cut(s) 24
MalI GATC 2 cut(s) 90, 437
MboI GATC 2 cut(s) 88, 435
MboII GAAGA 4 cut(s) 149, 191, 365, 404
MluCI AATT 2 cut(s) 215, 460
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 8 cut(s) 44, 47, 79, 124, 175, 220, 376, 462
MseI TTAA 6 cut(s) 96, 218, 303, 402, 446, 464
MslI CAYNNNNRTG 1 cut(s) 156
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 88, 435
NlaIII CATG 1 cut(s) 155
PfeI GAWTC 2 cut(s) 239, 386
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 6 cut(s) 96, 218, 303, 402, 446, 464
Sau3AI GATC 2 cut(s) 88, 435
SetI ASST 5 cut(s) 19, 25, 33, 58, 186
SgeI CNNG 8 cut(s) 36, 164, 205, 236, 238, 342, 384, 432
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 2 cut(s) 215, 460
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 128, 206, 359
TaqI TCGA 3 cut(s) 186, 252, 285
TasI AATT 2 cut(s) 215, 460
TfiI GAWTC 2 cut(s) 239, 386
Tru1I TTAA 6 cut(s) 96, 218, 303, 402, 446, 464
Tru9I TTAA 6 cut(s) 96, 218, 303, 402, 446, 464
TscAI CASTG 3 cut(s) 133, 211, 364
TspDTI ATGAA 2 cut(s) 150, 228
TspRI CASTG 3 cut(s) 133, 211, 364
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.