RWP-RK domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD06G1009300.v1.1 |
| rosa_chinensis | RchiOBHm_Chr6g0280731 RchiOBHm_Chr6g0280741 |
| rosa_laevigata | RLG00000013031 |
| rosa_multiflora | Rmu_co8197134.1_g000001 Rmu_sc0001197.1_g000011 Rmu_sc0025553.1_g000001 Rmu_sc0025867.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00187710 |
| rosa_samantha | Rh6AG246800 Rh6AG246900 Rh6BG249200 Rh6CG250300 |
| rosa_wichuraiana | Rw6G021380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 119 |
| Acc36I | ACCTGC | 1 cut(s) | 119 |
| AccI | GTMKAC | 1 cut(s) | 141 |
| AciI | CCGC | 1 cut(s) | 159 |
| AfaI | GTAC | 1 cut(s) | 118 |
| AgsI | TTSAA | 1 cut(s) | 78 |
| AluBI | AGCT | 2 cut(s) | 188, 228 |
| AluI | AGCT | 2 cut(s) | 188, 228 |
| AoxI | GGCC | 1 cut(s) | 9 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| BbsI | GAAGAC | 2 cut(s) | 66, 224 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 211, 245 |
| BfuAI | ACCTGC | 1 cut(s) | 119 |
| BmsI | GCATC | 1 cut(s) | 179 |
| BpiI | GAAGAC | 2 cut(s) | 66, 224 |
| BsaJI | CCNNGG | 1 cut(s) | 42 |
| Bse1I | ACTGG | 1 cut(s) | 233 |
| BseDI | CCNNGG | 1 cut(s) | 42 |
| BseMII | CTCAG | 1 cut(s) | 204 |
| BseNI | ACTGG | 1 cut(s) | 233 |
| BseRI | GAGGAG | 1 cut(s) | 214 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BsnI | GGCC | 1 cut(s) | 11 |
| Bsp143I | GATC | 2 cut(s) | 3, 222 |
| BspACI | CCGC | 1 cut(s) | 159 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BspCNI | CTCAG | 1 cut(s) | 205 |
| BspMI | ACCTGC | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 233 |
| BssECI | CCNNGG | 1 cut(s) | 42 |
| BssMI | GATC | 2 cut(s) | 3, 222 |
| BssT1I | CCWWGG | 1 cut(s) | 42 |
| Bst4CI | ACNGT | 2 cut(s) | 116, 123 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 191 |
| BstC8I | GCNNGC | 1 cut(s) | 230 |
| BstDEI | CTNAG | 2 cut(s) | 213, 239 |
| BstKTI | GATC | 2 cut(s) | 6, 225 |
| BstMBI | GATC | 2 cut(s) | 3, 222 |
| BstV2I | GAAGAC | 2 cut(s) | 66, 224 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BtsIMutI | CAGTG | 1 cut(s) | 128 |
| BveI | ACCTGC | 1 cut(s) | 119 |
| Cac8I | GCNNGC | 1 cut(s) | 230 |
| Csp6I | GTAC | 1 cut(s) | 117 |
| CviJI | RGCY | 4 cut(s) | 11, 89, 188, 228 |
| CviKI_1 | RGCY | 4 cut(s) | 11, 89, 188, 228 |
| CviQI | GTAC | 1 cut(s) | 117 |
| DdeI | CTNAG | 2 cut(s) | 213, 239 |
| DpnI | GATC | 2 cut(s) | 5, 224 |
| DpnII | GATC | 2 cut(s) | 3, 222 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 191 |
| EarI | CTCTTC | 2 cut(s) | 65, 191 |
| EciI | GGCGGA | 1 cut(s) | 174 |
| Eco130I | CCWWGG | 1 cut(s) | 42 |
| EcoT14I | CCWWGG | 1 cut(s) | 42 |
| ErhI | CCWWGG | 1 cut(s) | 42 |
| FblI | GTMKAC | 1 cut(s) | 141 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| HinfI | GANTC | 1 cut(s) | 143 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 3 cut(s) | 112, 119, 142 |
| Hpy188III | TCNNGA | 1 cut(s) | 174 |
| Hpy8I | GTNNAC | 3 cut(s) | 112, 119, 142 |
| HpyAV | CCTTC | 1 cut(s) | 13 |
| HpyCH4III | ACNGT | 2 cut(s) | 116, 123 |
| HpyCH4IV | ACGT | 1 cut(s) | 163 |
| HpyF3I | CTNAG | 2 cut(s) | 213, 239 |
| HpySE526I | ACGT | 1 cut(s) | 163 |
| Kzo9I | GATC | 2 cut(s) | 3, 222 |
| LpnPI | CCDG | 5 cut(s) | 89, 114, 159, 174, 246 |
| LweI | GCATC | 1 cut(s) | 179 |
| MaeII | ACGT | 1 cut(s) | 163 |
| MaeIII | GTNAC | 1 cut(s) | 81 |
| MalI | GATC | 2 cut(s) | 5, 224 |
| MboI | GATC | 2 cut(s) | 3, 222 |
| MboII | GAAGA | 4 cut(s) | 71, 82, 208, 229 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 3 cut(s) | 170, 192, 195 |
| NdeII | GATC | 2 cut(s) | 3, 222 |
| NmuCI | GTSAC | 1 cut(s) | 81 |
| PaqCI | CACCTGC | 1 cut(s) | 119 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| RsaI | GTAC | 1 cut(s) | 118 |
| RsaNI | GTAC | 1 cut(s) | 117 |
| Sau3AI | GATC | 2 cut(s) | 3, 222 |
| SchI | GAGTC | 1 cut(s) | 137 |
| SetI | ASST | 5 cut(s) | 83, 133, 166, 190, 230 |
| SfaNI | GCATC | 1 cut(s) | 179 |
| SsiI | CCGC | 1 cut(s) | 159 |
| StyI | CCWWGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 2 cut(s) | 116, 123 |
| TaiI | ACGT | 1 cut(s) | 166 |
| TaqI | TCGA | 1 cut(s) | 6 |
| TatI | WGTACW | 1 cut(s) | 116 |
| TscAI | CASTG | 1 cut(s) | 128 |
| TseFI | GTSAC | 1 cut(s) | 81 |
| Tsp45I | GTSAC | 1 cut(s) | 81 |
| TspRI | CASTG | 1 cut(s) | 128 |
| XmiI | GTMKAC | 1 cut(s) | 141 |