Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001197.1

Orthogroup ID

OG0016931

Physical Location & Seq

Genomic Coordinates Reverse (-)

75888 .. 77170

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001197.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgtttggcctgcatgcttctgtggcaattccctttcgaagtgtctatactggatcagctgattttgttctagagtttttcttacccaaggattgcccagatcctgaaaaacagaagcagatgctcaactcattctgcattgttacacaacaggcttgccggaggttacatgttgatgtagacaaaaaactcgaagaggaactcaggtttcctgttgttgcttcagatgggggtcttcacagagaagaaactcaaaaactgatcttatcccacagaagagccaactgcaaagtccacgacgattcttgctcatatgatcgaggccaaacagaaggtacacagtgggcagtgggcagggtgttttcagattttgggagacttcatcaaagttctggatcacatggtcttgttgagggtggtgtagactcttattcttttggcggacgtagggcatcaggaggcagaaaagctggtgagaagaggaggacaaagactgagaagacgatcagcttgccagttcttagtttgtttcaaatgcagtttgccccactaactgaaaaggatatgcaggcagcacaaccagatggccgtcccgaaagattaaaaaaggttggccactctctcaagaaactccagcttgtaatcgactcggttcaaggtgctgagggagctattcacattgggtccttctacaatagcttcccagaattgaattctccaaagtttccagggaatgctgctcaatattcgttgttcaatatgagtgaccattgcaagcaaatgcaccctcaacttgatctgactggcagcatattcagccatggaaccactacaaagtcatcatcgtcctcttgcagtcagacttctggccaaagtgtttgtgttcccagagtgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

299

Amino Acids

33.02

Weight (kDa)

8.86

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016931)

Species	Orthologous Gene IDs
malus_domestica	MD06G1009300.v1.1
rosa_chinensis	RchiOBHm_Chr6g0280731 RchiOBHm_Chr6g0280741
rosa_laevigata	RLG00000013031
rosa_multiflora	Rmu_co8197134.1_g000001 Rmu_sc0001197.1_g000011 Rmu_sc0025553.1_g000001 Rmu_sc0025867.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187710
rosa_samantha	Rh6AG246800 Rh6AG246900 Rh6BG249200 Rh6CG250300
rosa_wichuraiana	Rw6G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	180, 423
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	3 cut(s)	61, 95, 403
AcoI	YGGCCR	3 cut(s)	586, 613, 868
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	533, 656, 712, 757
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	6 cut(s)	59, 470, 510, 637, 671, 699
AluI	AGCT	6 cut(s)	59, 470, 510, 637, 671, 699
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	893
AlwI	GGATC	3 cut(s)	61, 95, 403
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	5 cut(s)	7, 322, 586, 613, 868
ApaLI	GTGCAC	1 cut(s)	893
ApeKI	GCWGC	3 cut(s)	572, 737, 807
ApoI	RAATTY	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	1 cut(s)	485
AsuII	TTCGAA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	684
BaeGI	GKGCMC	1 cut(s)	897
BalI	TGGCCA	2 cut(s)	615, 870
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	2 cut(s)	227, 506
Bbv12I	GWGCWC	1 cut(s)	897
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	584, 724, 819
BccI	CCATC	2 cut(s)	221, 578
BceAI	ACGGC	1 cut(s)	573
BcgI	CGANNNNNNTGC	2 cut(s)	493, 527
BciT130I	CCWGG	1 cut(s)	729
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	71, 898
BisI	GCNGC	3 cut(s)	573, 738, 808
BlsI	GCNGC	3 cut(s)	574, 739, 809
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	685, 826
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	2 cut(s)	111, 461
BpiI	GAAGAC	2 cut(s)	227, 506
BpmI	CTGGAG	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu14I	TTCGAA	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	87, 728, 820
Bse1I	ACTGG	3 cut(s)	55, 515, 808
Bse3DI	GCAATG	1 cut(s)	769
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	3 cut(s)	87, 728, 820
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	3 cut(s)	217, 486, 654
BseNI	ACTGG	3 cut(s)	55, 515, 808
BseRI	GAGGAG	1 cut(s)	496
BseSI	GKGCMC	1 cut(s)	897
BseXI	GCAGC	3 cut(s)	584, 724, 819
BshFI	GGCC	5 cut(s)	9, 324, 588, 615, 870
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	5 cut(s)	9, 324, 588, 615, 870
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	5 cut(s)	9, 324, 588, 615, 870
BspCNI	CTCAG	3 cut(s)	216, 487, 655
BspLI	GGNNCC	2 cut(s)	685, 826
BspPI	GGATC	3 cut(s)	61, 95, 403
BspQI	GCTCTTC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	769
BsrI	ACTGG	3 cut(s)	55, 515, 808
BssECI	CCNNGG	3 cut(s)	87, 728, 820
BssMI	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
BssT1I	CCWWGG	2 cut(s)	87, 820
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	3 cut(s)	189, 271, 473
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	6 cut(s)	11, 15, 157, 512, 570, 776
BstDEI	CTNAG	4 cut(s)	203, 495, 521, 663
BstDSI	CCRYGG	1 cut(s)	820
BstKTI	GATC	7 cut(s)	56, 103, 264, 319, 398, 507, 799
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 668, 816
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	2 cut(s)	17, 173
BstSCI	CCNGG	1 cut(s)	727
BstSLI	GKGCMC	1 cut(s)	897
BstV1I	GCAGC	3 cut(s)	584, 724, 819
BstV2I	GAAGAC	2 cut(s)	227, 506
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	9, 324, 588, 615, 870
BtgI	CCRYGG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	347, 354
Cac8I	GCNNGC	6 cut(s)	11, 15, 157, 512, 570, 776
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	684
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	4 cut(s)	14, 170, 401, 821
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	4 cut(s)	203, 495, 521, 663
DpnI	GATC	7 cut(s)	55, 102, 263, 318, 397, 506, 798
DpnII	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
EaeI	YGGCCR	3 cut(s)	586, 613, 868
Eam1104I	CTCTTC	3 cut(s)	189, 271, 473
EarI	CTCTTC	3 cut(s)	189, 271, 473
EciI	GGCGGA	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	87, 820
Eco47I	GGWCC	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	684
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	87, 820
ErhI	CCWWGG	2 cut(s)	87, 820
FaeI	CATG	4 cut(s)	17, 173, 404, 824
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	4 cut(s)	13, 169, 400, 820
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	2 cut(s)	180, 423
Fnu4HI	GCNGC	3 cut(s)	573, 738, 808
Fsp4HI	GCNGC	3 cut(s)	573, 738, 808
FspBI	CTAG	2 cut(s)	71, 898
GluI	GCNGC	3 cut(s)	573, 738, 808
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	5 cut(s)	9, 324, 588, 615, 870
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	4 cut(s)	17, 173, 404, 824
HinfI	GANTC	3 cut(s)	302, 425, 647
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	5 cut(s)	181, 295, 338, 424, 895
Hpy188I	TCNGA	4 cut(s)	226, 367, 801, 861
Hpy188III	TCNNGA	6 cut(s)	71, 104, 393, 456, 593, 625
Hpy8I	GTNNAC	5 cut(s)	181, 295, 338, 424, 895
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	326, 697
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	9 cut(s)	13, 138, 288, 538, 568, 774, 784, 855, 895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 668, 816
HpyF3I	CTNAG	4 cut(s)	203, 495, 521, 663
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	4 cut(s)	17, 173, 404, 824
Kzo9I	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	3 cut(s)	584, 724, 819
LweI	GCATC	2 cut(s)	111, 461
MaeI	CTAG	2 cut(s)	71, 898
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	3 cut(s)	142, 165, 764
MalI	GATC	7 cut(s)	55, 102, 263, 318, 397, 506, 798
MboI	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
MboII	GAAGA	6 cut(s)	206, 227, 257, 288, 490, 511
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	897
MlsI	TGGCCA	2 cut(s)	615, 870
MluCI	AATT	3 cut(s)	27, 707, 712
MluNI	TGGCCA	2 cut(s)	615, 870
MlyI	GAGTC	2 cut(s)	419, 641
Mox20I	TGGCCA	2 cut(s)	615, 870
MscI	TGGCCA	2 cut(s)	615, 870
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	2 cut(s)	615, 870
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	3 cut(s)	23, 668, 816
NcoI	CCATGG	1 cut(s)	820
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
NlaIII	CATG	4 cut(s)	17, 173, 404, 824
NlaIV	GGNNCC	2 cut(s)	685, 826
NmuCI	GTSAC	1 cut(s)	764
NspI	RCATGY	2 cut(s)	17, 173
NspV	TTCGAA	1 cut(s)	37
PaeI	GCATGC	1 cut(s)	17
PciI	ACATGT	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	271
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	574, 739, 809
PleI	GAGTC	2 cut(s)	419, 641
PpsI	GAGTC	2 cut(s)	419, 641
PpuMI	RGGWCCY	1 cut(s)	684
PscI	ACATGT	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	685, 826
PspPI	GGNCC	1 cut(s)	684
PspPPI	RGGWCCY	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	3 cut(s)	573, 738, 808
Sau3AI	GATC	7 cut(s)	53, 100, 261, 316, 395, 504, 796
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	2 cut(s)	419, 641
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	2 cut(s)	111, 461
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	3 cut(s)	27, 707, 712
SsiI	CCGC	1 cut(s)	441
SspI	AATATT	1 cut(s)	746
SspMI	CTAG	2 cut(s)	71, 898
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	2 cut(s)	87, 820
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	4 cut(s)	37, 192, 319, 645
TasI	AATT	3 cut(s)	27, 707, 712
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	2 cut(s)	347, 354
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	3 cut(s)	572, 737, 807
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	2 cut(s)	347, 354
VneI	GTGCAC	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	1 cut(s)	712
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	17, 173
XmiI	GTMKAC	2 cut(s)	180, 423
XspI	CTAG	2 cut(s)	71, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.