Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197134.1

Orthogroup ID

OG0016931

Physical Location & Seq

Genomic Coordinates Forward (+)

256 .. 594

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197134.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgtttggcctgcatgcttctgtggcaattccctttcgaagtgtctatactggatcagctgattttgttctagagtttttcttacccaaggattgcccagatcctgaaaaacagaagcagatgctcaactcattctgcattgttacacaacaggcttgccggaggttacatgttgatgtagacaaaaaactcgaagaggaactcaggtttcctgttgttgcttcagatgggggtcttcacagagaagaaactcaaaaactgatcttatcccacagaagagccaactgcaaagtccacgacgattcttgctcatatgatcgaggccaaacagaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

112

Amino Acids

12.77

Weight (kDa)

6.18

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016931)

Species	Orthologous Gene IDs
malus_domestica	MD06G1009300.v1.1
rosa_chinensis	RchiOBHm_Chr6g0280731 RchiOBHm_Chr6g0280741
rosa_laevigata	RLG00000013031
rosa_multiflora	Rmu_co8197134.1_g000001 Rmu_sc0001197.1_g000011 Rmu_sc0025553.1_g000001 Rmu_sc0025867.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187710
rosa_samantha	Rh6AG246800 Rh6AG246900 Rh6BG249200 Rh6CG250300
rosa_wichuraiana	Rw6G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	61, 95
AcuI	CTGAAG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	169
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	2 cut(s)	61, 95
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	7, 322
AsuII	TTCGAA	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	1 cut(s)	227
BccI	CCATC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	9, 324
BsiSI	CCGG	1 cut(s)	160
BsnI	GGCC	2 cut(s)	9, 324
Bsp119I	TTCGAA	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	53, 100, 261, 316
BspANI	GGCC	2 cut(s)	9, 324
BspCNI	CTCAG	1 cut(s)	216
BspPI	GGATC	2 cut(s)	61, 95
BspQI	GCTCTTC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	4 cut(s)	53, 100, 261, 316
BssT1I	CCWWGG	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	189, 271
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	11, 15, 157
BstDEI	CTNAG	1 cut(s)	203
BstKTI	GATC	4 cut(s)	56, 103, 264, 319
BstMBI	GATC	4 cut(s)	53, 100, 261, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	2 cut(s)	17, 173
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	9, 324
Cac8I	GCNNGC	3 cut(s)	11, 15, 157
CaiI	CAGNNNCTG	1 cut(s)	104
CviAII	CATG	2 cut(s)	14, 170
CviJI	RGCY	5 cut(s)	9, 59, 155, 281, 324
CviKI_1	RGCY	5 cut(s)	9, 59, 155, 281, 324
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	4 cut(s)	55, 102, 263, 318
DpnII	GATC	4 cut(s)	53, 100, 261, 316
Eam1104I	CTCTTC	2 cut(s)	189, 271
EarI	CTCTTC	2 cut(s)	189, 271
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	17, 173
FaiI	YATR	5 cut(s)	15, 48, 171, 313, 315
FatI	CATG	2 cut(s)	13, 169
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	9, 324
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	2 cut(s)	17, 173
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	181, 295
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	71, 104
Hpy8I	GTNNAC	2 cut(s)	181, 295
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	13, 138, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	17, 173
Kzo9I	GATC	4 cut(s)	53, 100, 261, 316
LguI	GCTCTTC	1 cut(s)	271
LpnPI	CCDG	8 cut(s)	23, 36, 111, 117, 137, 173, 190, 225
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	142, 165
MalI	GATC	4 cut(s)	55, 102, 263, 318
MboI	GATC	4 cut(s)	53, 100, 261, 316
MboII	GAAGA	4 cut(s)	206, 227, 257, 288
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	3 cut(s)	156, 190, 314
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	4 cut(s)	53, 100, 261, 316
NlaIII	CATG	2 cut(s)	17, 173
NspI	RCATGY	2 cut(s)	17, 173
NspV	TTCGAA	1 cut(s)	37
PaeI	GCATGC	1 cut(s)	17
PciI	ACATGT	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	302
PscI	ACATGT	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	271
Sau3AI	GATC	4 cut(s)	53, 100, 261, 316
SetI	ASST	3 cut(s)	61, 167, 209
SfaNI	GCATC	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	174
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	87
TaqI	TCGA	3 cut(s)	37, 192, 319
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	17, 173
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.