Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016931

Physical Location & Seq

Genomic Coordinates Forward (+)

42616149 .. 42618420

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTGCTAAAAGCATTGGTGTTTGCCCCACTAACTGAAAAGGATATGCAGGCAGCACAACCAGATGGCCTTCCCGAAAGATTAAAAAAGGTTGGCCACTCTCTCAAGAAACTCCAGCTTGTAATCGACTCGGTTCAAGGTGCTGAGGGAGCTATTCACATTGGGTCCTTCTACAATAGCTTCCCAGAATTGAATTCTCCAAAGTTTCTAGGGAATGCTGCTCAATATTCGTTGTTCAATATGAGTGACCATTGCAAGCAAATGCACCCTCAACTTGATCTGACTGGCAGCATATTCAGCCATGGAACCACTACAAAGTCATCATCGTCCTCTTGCAGTCAGACTTCTGGCCAAAGTGTTTGTGTTCCCAGAGTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

126

Amino Acids

13.63

Weight (kDa)

8.5

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016931)

Species	Orthologous Gene IDs
malus_domestica	MD06G1009300.v1.1
rosa_chinensis	RchiOBHm_Chr6g0280731 RchiOBHm_Chr6g0280741
rosa_laevigata	RLG00000013031
rosa_multiflora	Rmu_co8197134.1_g000001 Rmu_sc0001197.1_g000011 Rmu_sc0025553.1_g000001 Rmu_sc0025867.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187710
rosa_samantha	Rh6AG246800 Rh6AG246900 Rh6BG249200 Rh6CG250300
rosa_wichuraiana	Rw6G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	94, 349
AcsI	RAATTY	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	137, 193, 238
AluBI	AGCT	3 cut(s)	118, 152, 180
AluI	AGCT	3 cut(s)	118, 152, 180
Alw21I	GWGCWC	1 cut(s)	378
Alw44I	GTGCAC	1 cut(s)	374
AoxI	GGCC	3 cut(s)	67, 94, 349
ApaLI	GTGCAC	1 cut(s)	374
ApeKI	GCWGC	4 cut(s)	4, 53, 218, 288
ApoI	RAATTY	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	378
BalI	TGGCCA	2 cut(s)	96, 351
Bbv12I	GWGCWC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	65, 205, 300
BccI	CCATC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	209, 379
BisI	GCNGC	4 cut(s)	5, 54, 219, 289
BlsI	GCNGC	4 cut(s)	6, 55, 220, 290
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	166, 307
BpmI	CTGGAG	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	65, 205, 300
BshFI	GGCC	3 cut(s)	69, 96, 351
BsiHKAI	GWGCWC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	69, 96, 351
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	301
BspANI	GGCC	3 cut(s)	69, 96, 351
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	166, 307
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	51, 257
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 297
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	65, 205, 300
BsuRI	GGCC	3 cut(s)	69, 96, 351
BtgI	CCRYGG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	51, 257
Cfr13I	GGNCC	1 cut(s)	165
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	7 cut(s)	69, 96, 118, 152, 180, 300, 351
CviKI_1	RGCY	7 cut(s)	69, 96, 118, 152, 180, 300, 351
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	94, 349
Eco130I	CCWWGG	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	305
FaiI	YATR	4 cut(s)	47, 242, 293, 303
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	5, 54, 219, 289
Fsp4HI	GCNGC	4 cut(s)	5, 54, 219, 289
FspBI	CTAG	2 cut(s)	209, 379
GluI	GCNGC	4 cut(s)	5, 54, 219, 289
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	69, 96, 351
Hin1II	CATG	1 cut(s)	305
HinfI	GANTC	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	282, 342
Hpy188III	TCNNGA	2 cut(s)	74, 106
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	80, 178
HpyCH4V	TGCA	5 cut(s)	49, 255, 265, 336, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 297
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	6 cut(s)	35, 75, 128, 198, 270, 333
Lsp1109I	GCAGC	3 cut(s)	65, 205, 300
MaeI	CTAG	2 cut(s)	209, 379
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	378
MlsI	TGGCCA	2 cut(s)	96, 351
MluCI	AATT	2 cut(s)	188, 193
MluNI	TGGCCA	2 cut(s)	96, 351
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	3 cut(s)	139, 279, 340
Mox20I	TGGCCA	2 cut(s)	96, 351
MscI	TGGCCA	2 cut(s)	96, 351
MseI	TTAA	1 cut(s)	83
Msp20I	TGGCCA	2 cut(s)	96, 351
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	149, 297
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	2 cut(s)	166, 307
NmuCI	GTSAC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	6, 55, 220, 290
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	166, 307
PspPI	GGNCC	1 cut(s)	165
PspPPI	RGGWCCY	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	4 cut(s)	5, 54, 219, 289
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	5 cut(s)	93, 120, 142, 154, 182
SinI	GGWCC	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	188, 193
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	2 cut(s)	209, 379
StyI	CCWWGG	1 cut(s)	301
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	188, 193
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	4 cut(s)	4, 53, 218, 288
Tsp45I	GTSAC	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	193
XspI	CTAG	2 cut(s)	209, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.