Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016931

Physical Location & Seq

Genomic Coordinates Forward (+)

43542199 .. 43542564

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG246900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCAGTTTGCCCCACTAACTGAAAAGGATATGCAGGCAGCACAACCAGATGGCCTTCCCGAAAGATTAAAAAAGGTTGGCCACTCTCTCAAGAAACTCCAGCTTGTAATCGACTCGGTTCAAGGTGCTGAGGGAGCTATTCACATTGGGTCCTTCTACAATAGCTTCCCAGAATTGAATTCTCCAAAGTTTCCAGGGAATGATGCTCAATATTCGTTGTTCAATATGAGTGACCATTGCAAGCAAATGCACCCTCAACTTGATCTGACTGGCAGCATATTCAGCCATGGAACCACTACAAAGTCATCATCGTCCTCTTGCAGTCAGACTTCTGGCCAAAGTGTTTGTGTTCCCAGAGTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

121

Amino Acids

13.15

Weight (kDa)

7.0

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016931)

Species	Orthologous Gene IDs
malus_domestica	MD06G1009300.v1.1
rosa_chinensis	RchiOBHm_Chr6g0280731 RchiOBHm_Chr6g0280741
rosa_laevigata	RLG00000013031
rosa_multiflora	Rmu_co8197134.1_g000001 Rmu_sc0001197.1_g000011 Rmu_sc0025553.1_g000001 Rmu_sc0025867.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187710
rosa_samantha	Rh6AG246800 Rh6AG246900 Rh6BG249200 Rh6CG250300
rosa_wichuraiana	Rw6G021380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	79, 334
AcsI	RAATTY	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	122, 178, 223
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	3 cut(s)	103, 137, 165
AluI	AGCT	3 cut(s)	103, 137, 165
Alw21I	GWGCWC	1 cut(s)	363
Alw44I	GTGCAC	1 cut(s)	359
AoxI	GGCC	3 cut(s)	52, 79, 334
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	38, 273
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	363
BalI	TGGCCA	2 cut(s)	81, 336
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	50, 285
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	195
BfaI	CTAG	1 cut(s)	364
BisI	GCNGC	2 cut(s)	39, 274
BlsI	GCNGC	2 cut(s)	40, 275
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	151, 292
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	194, 286
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	194, 286
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	50, 285
BshFI	GGCC	3 cut(s)	54, 81, 336
BsiHKAI	GWGCWC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	54, 81, 336
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	262
Bsp19I	CCATGG	1 cut(s)	286
BspANI	GGCC	3 cut(s)	54, 81, 336
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	151, 292
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	194, 286
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	36, 242
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 282
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	50, 285
BsuRI	GGCC	3 cut(s)	54, 81, 336
BtgI	CCRYGG	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	36, 242
Cfr13I	GGNCC	1 cut(s)	150
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	7 cut(s)	54, 81, 103, 137, 165, 285, 336
CviKI_1	RGCY	7 cut(s)	54, 81, 103, 137, 165, 285, 336
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	79, 334
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	290
FaiI	YATR	4 cut(s)	32, 227, 278, 288
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	39, 274
Fsp4HI	GCNGC	2 cut(s)	39, 274
FspBI	CTAG	1 cut(s)	364
GluI	GCNGC	2 cut(s)	39, 274
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	54, 81, 336
Hin1II	CATG	1 cut(s)	290
HinfI	GANTC	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	267, 327
Hpy188III	TCNNGA	2 cut(s)	59, 91
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	65, 163
HpyCH4V	TGCA	6 cut(s)	4, 34, 240, 250, 321, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 282
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	8 cut(s)	20, 60, 113, 180, 183, 207, 255, 318
Lsp1109I	GCAGC	2 cut(s)	50, 285
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	2 cut(s)	81, 336
MluCI	AATT	2 cut(s)	173, 178
MluNI	TGGCCA	2 cut(s)	81, 336
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	124, 264, 325
Mox20I	TGGCCA	2 cut(s)	81, 336
MscI	TGGCCA	2 cut(s)	81, 336
MseI	TTAA	1 cut(s)	68
Msp20I	TGGCCA	2 cut(s)	81, 336
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	134, 282
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	151, 292
NmuCI	GTSAC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	40, 275
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	151, 292
PspPI	GGNCC	1 cut(s)	150
PspPPI	RGGWCCY	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	39, 274
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	5 cut(s)	78, 105, 127, 139, 167
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	173, 178
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	286
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	173, 178
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	38, 273
Tsp45I	GTSAC	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	178
XspI	CTAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.