Rroxscaffold_7G00187710

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
27107139 .. 27109911
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187710.1

Sequence Viewer

Length: 432 bp
ATGATTTCAGAATATGAGATTCAGGAGATATGGGGGTCTTCACAGAGAAGAAACTCAAAAACTGATGTCTTATCCCACAGAAGAGCCAACTGCTCCACGAAGATTCTTGCTCATATGATCGAGGCCAAACAGAAGGGTAAAGGGGTATCGATCTGTCCATCTCCTTGGATTATCGAACAGAAGAACCAAAGGAAGAGTTCAAGGTCACAAGCCATTGGGATAACAACCAAGCAGTTTACAGTACACAGTGGCAGGTGTTTTCAGATTTTGGGAGACTTCATCAAAGTTCTGGACCACATGGTCTTGTTGAGGGTGGTGCGGATTCTTATTCTTTTGGCGGGCTTAGGGCATCAGGAGGCAGAAAAGATAGTGAGAAGAGGAGGACAAAGACTGAGAAGACGATCATCTTGCCAATTCATAGGCAATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.3

Weight (kDa)

10.74

Isoelectric Point (pI)

67.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 243
AasI GACNNNNNNGTC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 243
AciI CCGC 2 cut(s) 319, 338
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 267
AoxI GGCC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 292
AvaII GGWCC 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 30, 403
BccI CCATC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BcoDI GTCTC 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 2 cut(s) 30, 403
Bpu10I CCTNAGC 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 393
BshFI GGCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 267
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 117, 150, 401
BspACI CCGC 2 cut(s) 319, 338
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 384
BspDI ATCGAT 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 243
BspQI GCTCTTC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 117, 150, 401
BssT1I CCWWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 241, 248
Bst6I CTCTTC 3 cut(s) 76, 188, 370
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 343, 392, 429
BstKTI GATC 3 cut(s) 120, 153, 404
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 3 cut(s) 117, 150, 401
BstV2I GAAGAC 2 cut(s) 30, 403
BstXI CCANNNNNNTGG 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 292
ClaI ATCGAT 1 cut(s) 149
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 298
CviJI RGCY 4 cut(s) 86, 125, 212, 342
CviKI_1 RGCY 4 cut(s) 86, 125, 212, 342
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 3 cut(s) 343, 392, 429
DpnI GATC 3 cut(s) 119, 152, 403
DpnII GATC 3 cut(s) 117, 150, 401
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 3 cut(s) 76, 188, 370
EarI CTCTTC 3 cut(s) 76, 188, 370
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 301
FaiI YATR 6 cut(s) 15, 31, 114, 116, 299, 419
FatI CATG 1 cut(s) 297
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 1 cut(s) 301
HinfI GANTC 3 cut(s) 19, 103, 322
Hpy166II GTNNAC 2 cut(s) 237, 244
Hpy188I TCNGA 2 cut(s) 10, 264
Hpy188III TCNNGA 3 cut(s) 23, 290, 353
Hpy8I GTNNAC 2 cut(s) 237, 244
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 241, 248
HpyF3I CTNAG 3 cut(s) 343, 392, 429
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 3 cut(s) 117, 150, 401
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 4 cut(s) 8, 238, 275, 338
LweI GCATC 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 204
MalI GATC 3 cut(s) 119, 152, 403
MboI GATC 3 cut(s) 117, 150, 401
MboII GAAGA 8 cut(s) 30, 60, 93, 112, 193, 205, 387, 408
MluCI AATT 1 cut(s) 413
MnlI CCTC 5 cut(s) 115, 303, 349, 371, 374
NdeI CATATG 1 cut(s) 114
NdeII GATC 3 cut(s) 117, 150, 401
NlaIII CATG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 19, 103, 322
PspPI GGNCC 1 cut(s) 292
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 76
Sau3AI GATC 3 cut(s) 117, 150, 401
Sau96I GGNCC 1 cut(s) 292
SetI ASST 2 cut(s) 206, 257
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 292
Sse9I AATT 1 cut(s) 413
SsiI CCGC 2 cut(s) 319, 338
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 241, 248
TaqI TCGA 3 cut(s) 120, 149, 174
TasI AATT 1 cut(s) 413
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 3 cut(s) 19, 103, 322
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 268, 406
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.