Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008823

Physical Location & Seq

Genomic Coordinates Reverse (-)

56245872 .. 56246222

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGATGATCATATTGCCATAGCGGAGAAATTGATAAAGAAAGCAAACAAGAAGTTGGATGGTTGGGGACTTATCGGTTCCAAACACAAAGATGTTGCCAAACTCTTGGATCAAGCTGCCAACTCTTACAAACTCGCCAAATCCAAGTATAAAGCTAGAGAAACATATATCAATTTGGCAATACATCATTTGAAGACCAAAACCAAACTTGAAGCCGCTGCCACAGCTTTTGTTGATGCTGCACATTGCTACGATATAACATCTGTTGATGAGGCCATTGATTGTCTAGAGCAAGGAGTAGATTACCTCTGTGAAATCGGAAGGCTTAACCCGGCTACAAACTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019905 GO:0022411 GO:0030054 GO:0031090 GO:0031201 GO:0032984 GO:0032991 GO:0033036 GO:0034613 GO:0035494 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 map04138 map04721

Pfam Domains

Protein Families

SNAP

Protein Analysis

116

Amino Acids

12.83

Weight (kDa)

7.72

Isoelectric Point (pI)

16.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	8 - 114	1e-22	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01080 FvH4_2g25430
rosa_chinensis	RchiOBHm_Chr6g0293641 RchiOBHm_Chr6g0293651
rosa_laevigata	RLG00000011936
rosa_multiflora	Rmu_sc0001792.1_g000037 Rmu_sc0008436.1_g000005 Rmu_sc0040173.1_g000001 Rmu_sc0040173.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174020
rosa_rugosa	Rorug03G0000500 Rorug06G0237000.1
rosa_samantha	Rh2BG013600 Rh2CG020700 Rh3AG060300 Rh3BG062400 Rh3CG061200 Rh3DG062000 Rh6BG357200 Rh6CG363900 Rh6CG364000 Rh6DG350900
rosa_wichuraiana	Rw3G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 216
AclWI	GGATC	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	193, 212
AluBI	AGCT	3 cut(s)	116, 155, 227
AluI	AGCT	3 cut(s)	116, 155, 227
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	116, 218, 239
AsuC2I	CCSGG	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	103, 205, 226
BccI	CCATC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	332
BfaI	CTAG	2 cut(s)	156, 287
BisI	GCNGC	4 cut(s)	117, 216, 219, 240
BlsI	GCNGC	4 cut(s)	118, 217, 220, 241
Bme1390I	CCNGG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	10, 64
BseMI	GCAATG	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	103, 205, 226
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	7, 109
BspACI	CCGC	2 cut(s)	23, 216
BspANI	GGCC	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	244
BssMI	GATC	2 cut(s)	7, 109
BstF5I	GGATG	2 cut(s)	10, 64
BstKTI	GATC	2 cut(s)	10, 112
BstMBI	GATC	2 cut(s)	7, 109
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	103, 205, 226
BstV2I	GAAGAC	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	10, 64
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviJI	RGCY	7 cut(s)	116, 155, 215, 227, 275, 325, 335
CviKI_1	RGCY	7 cut(s)	116, 155, 215, 227, 275, 325, 335
DpnI	GATC	2 cut(s)	9, 111
DpnII	GATC	2 cut(s)	7, 109
FaiI	YATR	7 cut(s)	12, 20, 150, 166, 168, 257, 349
FaqI	GGGAC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	117, 216, 219, 240
FokI	GGATG	2 cut(s)	17, 71
Fsp4HI	GCNGC	4 cut(s)	117, 216, 219, 240
FspBI	CTAG	2 cut(s)	156, 287
GluI	GCNGC	4 cut(s)	117, 216, 219, 240
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	332
HpaII	CCGG	1 cut(s)	332
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 109
LpnPI	CCDG	1 cut(s)	345
Lsp1109I	GCAGC	3 cut(s)	103, 205, 226
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	156, 287
MalI	GATC	2 cut(s)	9, 111
MboI	GATC	2 cut(s)	7, 109
MboII	GAAGA	1 cut(s)	205
MluCI	AATT	2 cut(s)	29, 172
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	265, 317
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	7, 109
NlaIV	GGNNCC	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	118, 217, 220, 241
PspN4I	GGNNCC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	4 cut(s)	117, 216, 219, 240
Sau3AI	GATC	2 cut(s)	7, 109
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	4 cut(s)	118, 157, 229, 309
SfaNI	GCATC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	29, 172
SsiI	CCGC	2 cut(s)	23, 216
SspMI	CTAG	2 cut(s)	156, 287
StyD4I	CCNGG	1 cut(s)	330
TasI	AATT	2 cut(s)	29, 172
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseI	GCWGC	3 cut(s)	116, 218, 239
XbaI	TCTAGA	1 cut(s)	286
XspI	CTAG	2 cut(s)	156, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.