Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Reverse (-)

67208929 .. 67210173

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTTCTCAAAGCCCCACTGTTTTCAGATGAATCAAATAGCATCTCCCATGTCCAAGTCTCCAATGAGCTCGCCGGAGATGGACGCCGGAATATGGAGCAACTTACCGGAGGAACTCCTGGATCGTATTCTCTCCATGCTGCCTCTCAAAACCTTCATGGTTCTGAGATCAACTTGCAAGCATTTCAAGTCTCTGTTATTCTCTCCCACTTTCATTTCCAAGCACTCTTCCTCCAATTCCTCACCCTTCTCTTCTTTTCTCATGCTTTCTCAACCGCAGTGCTATCCCGACTTCCCTCTCTACGACTCGCAGCTCTGCGCGTGGCGCAGCTTCGCTCTTTCACTCTCGGAATTGCTACCCTGCGCTGCAGGACCAGTCTCTCTGCTCTCCATCTCCAATGGGCTGCTCTGTTTCTCTCTGCCCAGCTCGTCTTCCTTTGTTGTCTGTAACTTCTTGACCAAGTCATCGAGAGTGATCCAATACCCTACCTACCCTTTTCATTTTGAGCTGCTTACTCTGGTTTCCACTCCAGTTGGGTACAATATTTTCATGCTCTCTTCTGAGTCTTCCACCAAGACTAGAACCTTTGTATATGATTCGAAGGTCCAGTCTTGGCAAAATTTAATCTCATTGGATACAATTCTCAGTGACAATCATCATCAAGAAGGTGTTCATTTCAATGGGTCTCTCTACTTTTCGACCCCGGAGCCATTCTCTATTGTCAACTTTAATTTGGAGAGTGGTAAATGGGAGAGACACAATACTGAACTCCCCGGAGAGCTCGTTTTTGTTCGATTAGTGAGTGATGAAGGAAAAGGGAAGATGTATTTGATTGGTGGGATTGGTAGGAATGGGATTTCAAGGAGAATGAAAATCTGGGAACTGTGTGAAGGAAAGAATTGGGTGGAGATTGAGAGTGTGCCTGAAATGATGTGCAGAAAGATAATGTCAGTTTGTTACCATAATTACGAGCATCTCTATTGCTTTTGGCATCAGGGTTTAATCTGTGTTTGCTGCTATGCGTGGCCTGAGATTTTGTATTACAAGGTTTCCAGGAGGACTTGGCATTGGCTCCCCAAAAGCCCTTTGGTGCCGGAAAGATGGGCTTGTGGCTTCAGGTGGTTTTCTTTTGTGCCGGAGTTGTATGCTTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

385

Amino Acids

44.25

Weight (kDa)

7.87

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	32 - 71	1.1e-08	F-box domain
F-box-like	PF12937	32 - 70	1.2e-06	F-box-like
FBA_1	PF07734	132 - 234	1.8e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1090
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	129, 469
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	2 cut(s)	1099, 1134
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	3 cut(s)	187, 679, 861
AjnI	CCWGG	2 cut(s)	117, 1052
AluBI	AGCT	6 cut(s)	69, 313, 330, 426, 508, 781
AluI	AGCT	6 cut(s)	69, 313, 330, 426, 508, 781
Alw21I	GWGCWC	2 cut(s)	71, 783
Alw26I	GTCTC	5 cut(s)	63, 195, 382, 690, 748
AlwI	GGATC	2 cut(s)	129, 469
AoxI	GGCC	1 cut(s)	1025
ApeKI	GCWGC	7 cut(s)	139, 310, 327, 365, 403, 508, 1014
ApoI	RAATTY	1 cut(s)	619
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	3 cut(s)	320, 327, 365
AspS9I	GGNCC	2 cut(s)	371, 604
AsuC2I	CCSGG	2 cut(s)	704, 774
AsuHPI	GGTGA	1 cut(s)	234
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	2 cut(s)	371, 604
BanI	GGYRCC	1 cut(s)	1090
BanII	GRGCYC	2 cut(s)	71, 783
BbsI	GAAGAC	2 cut(s)	423, 558
Bbv12I	GWGCWC	2 cut(s)	71, 783
BbvI	GCAGC	7 cut(s)	126, 322, 339, 352, 390, 495, 1001
BccI	CCATC	3 cut(s)	73, 398, 1095
BciT130I	CCWGG	2 cut(s)	119, 1054
BciVI	GTATCC	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	704, 774
BcoDI	GTCTC	5 cut(s)	63, 195, 382, 690, 748
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	7 cut(s)	140, 311, 328, 366, 404, 509, 1015
BlsI	GCNGC	7 cut(s)	141, 312, 329, 367, 405, 510, 1016
Bme1390I	CCNGG	4 cut(s)	119, 704, 774, 1054
Bme18I	GGWCC	2 cut(s)	371, 604
BmgT120I	GGNCC	2 cut(s)	371, 604
BmiI	GGNNCC	3 cut(s)	708, 1073, 1092
BmrFI	CCNGG	4 cut(s)	119, 704, 774, 1054
BmsI	GCATC	3 cut(s)	50, 982, 1000
BpiI	GAAGAC	2 cut(s)	423, 558
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	704, 774
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	690
BsaJI	CCNNGG	2 cut(s)	702, 772
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 768, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	3 cut(s)	374, 530, 607
BseBI	CCWGG	2 cut(s)	119, 1054
BseDI	CCNNGG	2 cut(s)	702, 772
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	4 cut(s)	155, 552, 658, 1020
BseNI	ACTGG	3 cut(s)	374, 530, 607
BseXI	GCAGC	7 cut(s)	126, 322, 339, 352, 390, 495, 1001
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	955
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	1027
BshNI	GGYRCC	1 cut(s)	1090
BsiHKAI	GWGCWC	2 cut(s)	71, 783
BsiSI	CCGG	7 cut(s)	74, 87, 107, 704, 774, 1094, 1136
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	5 cut(s)	63, 195, 382, 690, 748
BsnI	GGCC	1 cut(s)	1027
Bso31I	GGTCTC	1 cut(s)	690
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	71, 783
Bsp143I	GATC	3 cut(s)	121, 167, 474
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	1027
BspCNI	CTCAG	4 cut(s)	156, 553, 657, 1021
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	708, 1073, 1092
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	129, 469
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	1090
BspTNI	GGTCTC	1 cut(s)	690
BsrI	ACTGG	3 cut(s)	374, 530, 607
BssECI	CCNNGG	2 cut(s)	702, 772
BssMI	GATC	3 cut(s)	121, 167, 474
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	119, 1054
Bst4CI	ACNGT	2 cut(s)	20, 885
Bst6I	CTCTTC	3 cut(s)	232, 256, 562
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	71, 179
BstDEI	CTNAG	4 cut(s)	164, 561, 644, 1029
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	3 cut(s)	320, 327, 365
BstKTI	GATC	3 cut(s)	124, 170, 477
BstMAI	GTCTC	5 cut(s)	63, 195, 382, 690, 748
BstMBI	GATC	3 cut(s)	121, 167, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	2 cut(s)	119, 1054
BstSCI	CCNGG	4 cut(s)	117, 702, 772, 1052
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	7 cut(s)	126, 322, 339, 352, 390, 495, 1001
BstV2I	GAAGAC	2 cut(s)	423, 558
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	1027
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	4 cut(s)	16, 284, 652, 1158
Cac8I	GCNNGC	2 cut(s)	71, 179
CfoI	GCGC	3 cut(s)	320, 327, 365
Cfr13I	GGNCC	2 cut(s)	371, 604
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	538
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	5 cut(s)	49, 136, 157, 262, 550
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	4 cut(s)	164, 561, 644, 1029
DpnI	GATC	3 cut(s)	123, 169, 476
DpnII	GATC	3 cut(s)	121, 167, 474
Eam1104I	CTCTTC	3 cut(s)	232, 256, 562
EarI	CTCTTC	3 cut(s)	232, 256, 562
Ecl136II	GAGCTC	2 cut(s)	69, 781
Eco24I	GRGCYC	2 cut(s)	71, 783
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	2 cut(s)	371, 604
Eco53kI	GAGCTC	2 cut(s)	69, 781
Eco57I	CTGAAG	2 cut(s)	1099, 1134
EcoICRI	GAGCTC	2 cut(s)	69, 781
EcoRII	CCWGG	2 cut(s)	117, 1052
EcoT38I	GRGCYC	2 cut(s)	71, 783
FaeI	CATG	5 cut(s)	52, 139, 160, 265, 553
FalI	AAGNNNNNCTT	2 cut(s)	1090, 1122
FatI	CATG	5 cut(s)	48, 135, 156, 261, 549
Fnu4HI	GCNGC	7 cut(s)	140, 311, 328, 366, 404, 509, 1015
FriOI	GRGCYC	2 cut(s)	71, 783
Fsp4HI	GCNGC	7 cut(s)	140, 311, 328, 366, 404, 509, 1015
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	3 cut(s)	319, 326, 364
GluI	GCNGC	7 cut(s)	140, 311, 328, 366, 404, 509, 1015
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	1027
HapII	CCGG	7 cut(s)	74, 87, 107, 704, 774, 1094, 1136
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	3 cut(s)	320, 327, 365
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	52, 139, 160, 265, 553
Hin6I	GCGC	3 cut(s)	318, 325, 363
HinP1I	GCGC	3 cut(s)	318, 325, 363
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	4 cut(s)	31, 305, 563, 596
HpaII	CCGG	7 cut(s)	74, 87, 107, 704, 774, 1094, 1136
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	4 cut(s)	27, 165, 349, 562
Hpy188III	TCNNGA	4 cut(s)	287, 454, 468, 662
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	6 cut(s)	163, 256, 595, 659, 803, 884
HpyCH4III	ACNGT	2 cut(s)	20, 885
HpyCH4V	TGCA	3 cut(s)	177, 368, 936
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	4 cut(s)	164, 561, 644, 1029
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	52, 139, 160, 265, 553
HspAI	GCGC	3 cut(s)	318, 325, 363
Kzo9I	GATC	3 cut(s)	121, 167, 474
LmnI	GCTCC	3 cut(s)	96, 706, 1077
Lsp1109I	GCAGC	7 cut(s)	126, 322, 339, 352, 390, 495, 1001
LweI	GCATC	3 cut(s)	50, 982, 1000
MaeI	CTAG	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	446, 647, 956
MalI	GATC	3 cut(s)	123, 169, 476
MboI	GATC	3 cut(s)	121, 167, 474
MboII	GAAGA	6 cut(s)	219, 243, 423, 549, 558, 832
MhlI	GDGCHC	2 cut(s)	71, 783
MluCI	AATT	7 cut(s)	235, 350, 619, 639, 730, 898, 964
MlyI	GAGTC	2 cut(s)	299, 572
MnlI	CCTC	6 cut(s)	103, 153, 241, 250, 306, 1050
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	3 cut(s)	623, 729, 1001
MslI	CAYNNNNRTG	1 cut(s)	678
MspI	CCGG	7 cut(s)	74, 87, 107, 704, 774, 1094, 1136
MspR9I	CCNGG	4 cut(s)	119, 704, 774, 1054
MvaI	CCWGG	2 cut(s)	119, 1054
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	704, 774
NdeII	GATC	3 cut(s)	121, 167, 474
NlaIII	CATG	5 cut(s)	52, 139, 160, 265, 553
NlaIV	GGNNCC	3 cut(s)	708, 1073, 1092
NmuCI	GTSAC	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	599
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	2 cut(s)	31, 596
PflFI	GACNNNGTC	1 cut(s)	460
PfoI	TCCNGGA	2 cut(s)	117, 1052
PkrI	GCNGC	7 cut(s)	141, 312, 329, 367, 405, 510, 1016
PleI	GAGTC	2 cut(s)	299, 571
PpsI	GAGTC	2 cut(s)	299, 571
Psp124BI	GAGCTC	2 cut(s)	71, 783
Psp6I	CCWGG	2 cut(s)	117, 1052
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	117, 1052
PspN4I	GGNNCC	3 cut(s)	708, 1073, 1092
PspPI	GGNCC	2 cut(s)	371, 604
PstI	CTGCAG	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	460
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	678
SacI	GAGCTC	2 cut(s)	71, 783
SaqAI	TTAA	3 cut(s)	623, 729, 1001
SatI	GCNGC	7 cut(s)	140, 311, 328, 366, 404, 509, 1015
Sau3AI	GATC	3 cut(s)	121, 167, 474
Sau96I	GGNCC	2 cut(s)	371, 604
SchI	GAGTC	2 cut(s)	299, 572
ScrFI	CCNGG	4 cut(s)	119, 704, 774, 1054
SduI	GDGCHC	2 cut(s)	71, 783
SfaNI	GCATC	3 cut(s)	50, 982, 1000
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	2 cut(s)	371, 604
SmiMI	CAYNNNNRTG	1 cut(s)	678
Sse9I	AATT	7 cut(s)	235, 350, 619, 639, 730, 898, 964
SsiI	CCGC	1 cut(s)	275
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	1 cut(s)	579
SstI	GAGCTC	2 cut(s)	71, 783
StyD4I	CCNGG	4 cut(s)	117, 702, 772, 1052
TaaI	ACNGT	2 cut(s)	20, 885
TaqI	TCGA	4 cut(s)	467, 599, 698, 793
TasI	AATT	7 cut(s)	235, 350, 619, 639, 730, 898, 964
TfiI	GAWTC	2 cut(s)	31, 596
Tru1I	TTAA	3 cut(s)	623, 729, 1001
Tru9I	TTAA	3 cut(s)	623, 729, 1001
TscAI	CASTG	4 cut(s)	23, 284, 652, 1158
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	7 cut(s)	139, 310, 327, 365, 403, 508, 1014
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	8 cut(s)	44, 145, 202, 488, 538, 662, 822, 884
TspRI	CASTG	4 cut(s)	23, 284, 652, 1158
Tth111I	GACNNNGTC	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	371, 604
XapI	RAATTY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.