RchiOBHm_Chr5g0006301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014210
Physical Location & Seq
Reverse (-)
3919993 .. 3921115
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
ATGGAACAAACTGCGAGTCATGTATGGGATTTGAGTTCTGTTTCGGATTTGGTTTTCGCTGAAACAATGAAGTACTTTTGGGCTTCGATTTCCTCAAGTCCTCTGTATTCAAGCATTGTCACTCTTTACTCTCTGATCCTCCTTTACTTCCCGTACCATTTTTTAAGCATTGTTTTCTCGCCGGTGCTGATCATAACCGGAATAATCTTGATCAGCCTTATCCGACTCGGTGCAAGTCAGAGTTTTGAAGACGATGATCTCAAAGAAAAGGAAAAAGATTCCATACTCGAAACAGAGCACTCTGAAACCAATGATAGTCTTGAAGTCGTTCATGAACAAATTGCAAGTGTTGTACAAGAAGAAGATCACAGCTTTGTCACGTATCGATTCGAAACAGACGAAAGCGAGATGGGTTTCAATCAGTACCCCTGTTTCGATGATTACTTTGTTGAGTGGAATGTGAAGGCGCCATTAGAGGTCATCTATGAAGAATATGAAGGTGAAGAAGATGAGAAGGATAATCGTGAAGAACATGAAAACCAAGTTTTGGGTCTTGGAAGGCAGCCTTCGTTGTCTCTATATTACCCGGAGTCGGATTCGGATACATCATCGGACGGCGACTTTTCGGTGACCGGAGCGTGGGACTCGCCGGAAAACATGTGCTACAAGTGGGAAGAGGATGACCGAGAAGGGTTGATTGAGATTGCTTTGGATGGCAATAAGAGTTCAGGCTTAGAATTTCAAGTTGACGAAGAGAATTTGATAGAGATTGATATATCTCCGACGAGAAGCAATGACTTTGGCGGTGAGAAGTGGATGTTTTCCGGTGAGATTAGATTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

32.3

Weight (kDa)

4.05

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05018 AT4G21500
fragaria_vesca FvH4_3g03970
malus_domestica MD05G1325600.v1.1 MD10G1303500.v1.1
prunus_persica Prupe.4G037000_v2.0.a1
pyrus_communis pycom05g29970
rosa_chinensis RchiOBHm_Chr5g0006301
rosa_laevigata RLG00000031366
rosa_multiflora Rmu_co8467785.1_g000001
rosa_roxburghii Rroxscaffold_2G00115670
rosa_rugosa Rorug04G0420900
rosa_samantha Rh5AG048800 Rh5BG047800 Rh5CG056200 Rh5DG047100
rosa_wichuraiana Rw5G004860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 547
AciI CCGC 1 cut(s) 804
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 2 cut(s) 737, 757
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 4 cut(s) 74, 155, 354, 425
AfiI CCNNNNNNNGG 3 cut(s) 547, 592, 639
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 5 cut(s) 111, 248, 323, 418, 743
AluBI AGCT 2 cut(s) 372, 843
AluI AGCT 2 cut(s) 372, 843
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 579
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 562
ApoI RAATTY 2 cut(s) 737, 757
ArsI GACNNNNNNTTYG 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 4 cut(s) 512, 640, 818, 839
AsuII TTCGAA 1 cut(s) 390
BanI GGYRCC 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 574
BccI CCATC 2 cut(s) 403, 707
BceAI ACGGC 1 cut(s) 631
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 2 cut(s) 189, 210
BcnI CCSGG 1 cut(s) 587
BcoDI GTCTC 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 470
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 1 cut(s) 563
BlsI GCNGC 1 cut(s) 564
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 587
Bsa29I ATCGAT 1 cut(s) 385
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 467
BsaWI WCCGGW 3 cut(s) 197, 632, 824
Bsc4I CCNNNNNNNGG 3 cut(s) 547, 592, 639
Bse118I RCCGGY 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 799
BseCI ATCGAT 1 cut(s) 385
BseGI GGATG 3 cut(s) 685, 718, 822
BseLI CCNNNNNNNGG 3 cut(s) 547, 592, 639
BseMI GCAATG 1 cut(s) 799
BseXI GCAGC 1 cut(s) 574
BshNI GGYRCC 1 cut(s) 466
BshVI ATCGAT 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 6 cut(s) 182, 198, 587, 633, 650, 825
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 3 cut(s) 547, 592, 639
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 1 cut(s) 656
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 352
Bsp143I GATC 5 cut(s) 135, 189, 210, 256, 364
BspACI CCGC 1 cut(s) 804
BspDI ATCGAT 1 cut(s) 385
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 468
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 799
BsrFI RCCGGY 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 181
BssMI GATC 5 cut(s) 135, 189, 210, 256, 364
BssNI GRCGYC 1 cut(s) 467
Bst6I CTCTTC 2 cut(s) 669, 747
BstACI GRCGYC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 381
BstBI TTCGAA 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 733
BstEII GGTNACC 1 cut(s) 628
BstF5I GGATG 3 cut(s) 685, 718, 822
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 5 cut(s) 138, 192, 213, 259, 367
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 5 cut(s) 135, 189, 210, 256, 364
BstNSI RCATGY 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 585
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 385
BsuI GTATCC 1 cut(s) 595
BsuTUI ATCGAT 1 cut(s) 385
BtsCI GGATG 3 cut(s) 685, 718, 822
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 181
ClaI ATCGAT 1 cut(s) 385
Csp6I GTAC 4 cut(s) 73, 154, 353, 424
CviAII CATG 4 cut(s) 20, 332, 533, 658
CviJI RGCY 6 cut(s) 83, 216, 372, 565, 732, 843
CviKI_1 RGCY 6 cut(s) 83, 216, 372, 565, 732, 843
CviQI GTAC 4 cut(s) 73, 154, 353, 424
DdeI CTNAG 1 cut(s) 733
DinI GGCGCC 1 cut(s) 468
DpnI GATC 5 cut(s) 137, 191, 212, 258, 366
DpnII GATC 5 cut(s) 135, 189, 210, 256, 364
Eam1104I CTCTTC 2 cut(s) 669, 747
EarI CTCTTC 2 cut(s) 669, 747
Eco91I GGTNACC 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 628
EgeI GGCGCC 1 cut(s) 468
EheI GGCGCC 1 cut(s) 468
FaeI CATG 4 cut(s) 23, 335, 536, 661
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FaqI GGGAC 1 cut(s) 656
FatI CATG 4 cut(s) 19, 331, 532, 657
FbaI TGATCA 2 cut(s) 189, 210
Fnu4HI GCNGC 1 cut(s) 563
FokI GGATG 3 cut(s) 692, 725, 829
Fsp4HI GCNGC 1 cut(s) 563
GlaI GCGC 1 cut(s) 468
GluI GCNGC 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 470
HapII CCGG 6 cut(s) 182, 198, 587, 633, 650, 825
HhaI GCGC 1 cut(s) 469
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 4 cut(s) 23, 335, 536, 661
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 8 cut(s) 16, 225, 278, 387, 590, 596, 644, 837
HpaII CCGG 6 cut(s) 182, 198, 587, 633, 650, 825
HphI GGTGA 4 cut(s) 512, 640, 818, 839
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 9 cut(s) 46, 135, 224, 240, 304, 595, 601, 613, 783
Hpy188III TCNNGA 4 cut(s) 208, 320, 332, 524
Hpy8I GTNNAC 1 cut(s) 748
Hpy99I CGWCG 1 cut(s) 787
HpyAV CCTTC 6 cut(s) 457, 491, 508, 552, 576, 683
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 233, 344
HpyF3I CTNAG 1 cut(s) 733
HpySE526I ACGT 1 cut(s) 380
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 4 cut(s) 23, 335, 536, 661
HspAI GCGC 1 cut(s) 467
KasI GGCGCC 1 cut(s) 466
Ksp22I TGATCA 2 cut(s) 189, 210
Kzo9I GATC 5 cut(s) 135, 189, 210, 256, 364
LmnI GCTCC 1 cut(s) 635
LpnPI CCDG 8 cut(s) 195, 211, 442, 600, 646, 663, 714, 838
Lsp1109I GCAGC 1 cut(s) 574
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 3 cut(s) 118, 376, 628
MalI GATC 5 cut(s) 137, 191, 212, 258, 366
MboI GATC 5 cut(s) 135, 189, 210, 256, 364
MboII GAAGA 9 cut(s) 260, 371, 374, 500, 515, 518, 539, 686, 764
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 3 cut(s) 339, 737, 757
Mly113I GGCGCC 1 cut(s) 467
MlyI GAGTC 4 cut(s) 25, 219, 599, 638
MmeI TCCRAC 3 cut(s) 247, 573, 806
MnlI CCTC 5 cut(s) 103, 111, 149, 469, 670
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 164
MspI CCGG 6 cut(s) 182, 198, 587, 633, 650, 825
MspR9I CCNGG 1 cut(s) 587
NarI GGCGCC 1 cut(s) 467
NciI CCSGG 1 cut(s) 587
NdeII GATC 5 cut(s) 135, 189, 210, 256, 364
NlaIII CATG 4 cut(s) 23, 335, 536, 661
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 3 cut(s) 118, 376, 628
NspI RCATGY 1 cut(s) 661
NspV TTCGAA 1 cut(s) 390
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 4 cut(s) 278, 387, 596, 837
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 1 cut(s) 564
PleI GAGTC 4 cut(s) 24, 219, 598, 638
PluTI GGCGCC 1 cut(s) 470
PpsI GAGTC 4 cut(s) 24, 219, 598, 638
Ppu21I YACGTR 1 cut(s) 381
PscI ACATGT 1 cut(s) 657
PspEI GGTNACC 1 cut(s) 628
PspN4I GGNNCC 1 cut(s) 468
RsaI GTAC 4 cut(s) 74, 155, 354, 425
RsaNI GTAC 4 cut(s) 73, 154, 353, 424
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 563
Sau3AI GATC 5 cut(s) 135, 189, 210, 256, 364
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 4 cut(s) 25, 219, 599, 638
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 300
SetI ASST 5 cut(s) 374, 383, 480, 502, 845
SfoI GGCGCC 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 390
SgrAI CRCCGGYG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 3 cut(s) 339, 737, 757
SsiI CCGC 1 cut(s) 804
SspDI GGCGCC 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 585
TaiI ACGT 1 cut(s) 383
TaqI TCGA 5 cut(s) 86, 288, 385, 390, 435
TaqII GACCGA 1 cut(s) 699
TasI AATT 3 cut(s) 339, 737, 757
TatI WGTACW 2 cut(s) 72, 352
TfiI GAWTC 4 cut(s) 278, 387, 596, 837
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 3 cut(s) 118, 376, 628
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 3 cut(s) 118, 376, 628
TspDTI ATGAA 6 cut(s) 83, 320, 348, 501, 510, 549
Van91I CCANNNNNTGG 1 cut(s) 547
XapI RAATTY 2 cut(s) 737, 757
XceI RCATGY 1 cut(s) 661
XmnI GAANNNNTTC 1 cut(s) 327
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.