RchiOBHm_Chr5g0008731

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012593
Physical Location & Seq
Forward (+)
5653226 .. 5659074
5849 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1941 bp
ATGGCCAATTCTTCGGGCCGTGTTGACTTCTGGGATGCTGAAAAGATGCTTGATCTTTATCTGCACGATTATATGGTGAAGAAGAATATGCACTCCACTGCTGAAATCTTCAGGAGAGAAGCTGATGTCTATTCTGAAAGTCCTGTTGTTATTGATACCAAGGAGGGGTTCTTAAATGAATGGTGGACTTTGTTTTATGATGTGTATTCGTCTAGGGCACAATTGAAGCATCAAGATCAGGCCAAGGTTGAAGCACCAGTTCAGGAAAGGAGAGAGAATGAGCAGCAACGTAAACATCCAAGAGTGCCTGAAGATTTACCAAGAGTGCCTACTGCACCTTTAGCAACCAAGCAAAAGAGGTCTCGACGAACGCCTAGGACCAGGAGTATTGACTACTTTAGTAAGTGGTTGGGGATACCAGGTGGAGATTTTGGTCCCAATTTGCATCCGCTTCGTGTCAATGATCTGAATATCTCAAAGTCACTTGCAACCAGTTCAAGCCCTCTGCATCAGCAACTCCTCAAGAATATTGCTCAAATGCAGGTGCAGGACAACAGAAATGTCATTAGCTTCGGCAGGACTAACAACATTGGCTCTAAGGTTTTTGGACTGCGTAACTCCTTACTCCCACTAACTGGAGCTCAGGATGCAGGTATAAGCGGAGTTGAACCTGGACCACAAATTGGAAGGCCTTTAAAAGTAGTAAGCGCAGCTTTGCAGGCTCCAAACCACCAACAACTGATTGAGACATCAACAACAGAACATCAGCATCCACCTTTGAGTGATCAGATGGTGGGTTGCCTCTTGAGACAAATTGCAGAGCCCCAGCAACAACCTGATCAGCAGCAGTTACTAGAGGATGACAGAGAGAGGAGGACAGCATCAGGAGCTGGAGACAGTCATTTGGAAAATACGAGTGCTAATGAAGATGCCCCTGTGGAAGAAAATACCGAGTCTTTCTTGTCCTATGAGGATGACAGTGCTGCTGGTGGTACAAGCACTCCATTCAAGGCTTCAAAGCGTCGTGGTGGGAAAAAAAAGCACGAAAGGGGCTTCAAGTTCGAAGAAATTTGTTCTCTCCATTCAAGCATGGCTAAGGTTATATGCTGCCATTTTTCATCAAATGGGACGTTGTTAGCAAGTGCAGGGCATGAAAAAAAGCAGGTTCTGATTTGGAACATGGAAACTTTTGATGTTGTTAAAACTTTCGAAGAGCATTCTCATCTCATTACAGATGTACGGTTTAGACCAAATTCAACAACGTTTGCAACATCTTCGTTTGATAGAAATGTGAAGATATGGGATGCAGCCAGACCAAGTGAATCAATATCCAAGCTTGAAGGGCACACTGAGCATGTAATGTCAGTGGATTTTCACCCAAGGAAGTTCAATCTCCTTTCATCATGCGATAGTAACGATGAAATCCGACTGTGGAATGTCAACCAATCTAAGTGCACACGCATGTTTAAGGGAGCAACTAAACAAGTCAGATTCCAGCCTCGATTTGGAAAATATTTGGCTGCTGCTTCAGGAAATAGTGTCAATACTTTTGATGTTGAGACTGCCAGTTTCGACTTGTATTCGAAGGGATCTGGACATGCCAAAGATGTCCTTTCAATTTGCTGGGATACAAGTGGGAAGTATCTTGCCTCTGTTAGTGAAGACAGTGCACGGATTTGGTCAACTGCATCAAGCGGAAAATGCATATATGAACTCCACTCAAATGGCAACAAATTCCAATCATGCACATTTCATCCTGGATATTCACTACTCTTGATCATTGGTTGTTACGAGTCTCTTGAGTTGTGGAGTCCAAGTGAGAGCAATAAAACTATGACTGTTCCAGCGCACAAGGGGCTAGTTGCTGCACTGGCATCATCCCCAAAGACTGACATGGTTGCCTCAGGGAGCCATGATCAGGTCGTCAAACTATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

646

Amino Acids

72.29

Weight (kDa)

7.67

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 348 - 489 4.8e-09 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 353 - 437 9.6e-08 EIF3I
WD40_MABP1-WDR62_2nd PF24782 353 - 557 6.1e-13 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 354 - 436 3.6e-11 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 355 - 496 7.5e-22 WDR3 first beta-propeller domain
WDR55 PF24796 355 - 486 2e-07 WDR55
WD40_CDC20-Fz PF24807 357 - 489 9.4e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 358 - 480 1.6e-14 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 361 - 495 1.4e-17 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 363 - 460 5.1e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 363 - 496 4.4e-28 WDR5 beta-propeller domain
Beta-prop_EML PF23409 364 - 493 4.6e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 364 - 484 8.5e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 396 - 494 3.1e-06 TEP-1 second beta-propeller
WD40 PF00400 399 - 435 8.8e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 406 - 522 9.7e-18 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 409 - 562 1.7e-07 Aladin seven-bladed propeller
WD40_WDHD1_1st PF24817 410 - 587 3.5e-19 WDHD1 first WD40 domain
WD40_Prp19 PF24814 441 - 520 2.1e-06 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 444 - 593 1.6e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 473 - 646 2.4e-18 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 474 - 645 1.9e-16 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 490 - 569 3.2e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 493 - 645 2.2e-21 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 494 - 645 6.1e-17 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 504 - 642 8e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 536 - 646 2.9e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
Acc36I ACCTGC 3 cut(s) 532, 641, 1153
AccB7I CCANNNNNTGG 2 cut(s) 635, 683
AciI CCGC 3 cut(s) 449, 660, 1695
AclI AACGTT 1 cut(s) 1262
AclWI GGATC 1 cut(s) 1597
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 1068, 1252, 1733
AcuI CTGAAG 3 cut(s) 94, 330, 1512
AfaI GTAC 2 cut(s) 994, 1239
AfiI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1505, 1918
AjnI CCWGG 4 cut(s) 380, 418, 670, 1756
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 6 cut(s) 122, 570, 641, 713, 890, 1336
AluI AGCT 6 cut(s) 122, 570, 641, 713, 890, 1336
Alw21I GWGCWC 3 cut(s) 643, 1457, 1672
Alw26I GTCTC 6 cut(s) 366, 740, 802, 888, 1553, 1800
Alw44I GTGCAC 2 cut(s) 1453, 1668
AlwI GGATC 1 cut(s) 1597
AlwNI CAGNNNCTG 2 cut(s) 890, 1168
AoxI GGCC 4 cut(s) 3, 16, 240, 689
ApaLI GTGCAC 2 cut(s) 1453, 1668
ApeKI GCWGC 9 cut(s) 283, 710, 844, 983, 1107, 1307, 1520, 1523, 1865
ApoI RAATTY 3 cut(s) 1068, 1252, 1733
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 2 cut(s) 710, 1849
AspS9I GGNCC 4 cut(s) 16, 378, 434, 674
AsuHPI GGTGA 2 cut(s) 88, 1367
AsuII TTCGAA 3 cut(s) 1062, 1209, 1583
AvaII GGWCC 3 cut(s) 378, 434, 674
AvrII CCTAGG 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 1903
BaeGI GKGCMC 4 cut(s) 220, 1347, 1457, 1672
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 643, 825
BbsI GAAGAC 1 cut(s) 1668
Bbv12I GWGCWC 3 cut(s) 643, 1457, 1672
BbvI GCAGC 9 cut(s) 295, 722, 856, 970, 1094, 1319, 1507, 1510, 1852
BccI CCATC 1 cut(s) 784
BceAI ACGGC 1 cut(s) 3
BcgI CGANNNNNNTGC 4 cut(s) 434, 468, 1257, 1291
BciT130I CCWGG 4 cut(s) 382, 420, 672, 1758
BciVI GTATCC 2 cut(s) 408, 1621
BclI TGATCA 4 cut(s) 784, 838, 1776, 1915
BcoDI GTCTC 6 cut(s) 366, 740, 802, 888, 1553, 1800
BfaI CTAG 4 cut(s) 213, 375, 854, 1859
BfuAI ACCTGC 3 cut(s) 532, 641, 1153
BfuI GTATCC 2 cut(s) 408, 1621
BisI GCNGC 9 cut(s) 284, 711, 845, 984, 1108, 1308, 1521, 1524, 1866
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 9 cut(s) 285, 712, 846, 985, 1109, 1309, 1522, 1525, 1867
Bme1390I CCNGG 4 cut(s) 382, 420, 672, 1758
Bme18I GGWCC 3 cut(s) 378, 434, 674
BmgT120I GGNCC 4 cut(s) 16, 378, 434, 674
BmiI GGNNCC 3 cut(s) 436, 723, 1910
BmrFI CCNGG 4 cut(s) 382, 420, 672, 1758
BpiI GAAGAC 1 cut(s) 1668
BpmI CTGGAG 2 cut(s) 657, 912
Bpu10I CCTNAGC 2 cut(s) 642, 1095
Bpu14I TTCGAA 3 cut(s) 1062, 1209, 1583
BpuEI CTTGAG 3 cut(s) 506, 826, 1820
BsaBI GATNNNNATC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 159, 243, 374, 1379
BsaXI ACNNNNNCTCC 4 cut(s) 985, 1015, 1801, 1831
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1505, 1918
Bse1I ACTGG 5 cut(s) 257, 492, 640, 1566, 1875
Bse21I CCTNAGG 1 cut(s) 1903
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 4 cut(s) 382, 420, 672, 1758
BseDI CCNNGG 4 cut(s) 159, 243, 374, 1379
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1505, 1918
BseMII CTCAG 3 cut(s) 656, 1341, 1917
BseNI ACTGG 5 cut(s) 257, 492, 640, 1566, 1875
BseRI GAGGAG 2 cut(s) 509, 886
BseSI GKGCMC 4 cut(s) 220, 1347, 1457, 1672
BseXI GCAGC 9 cut(s) 295, 722, 856, 970, 1094, 1319, 1507, 1510, 1852
BseYI CCCAGC 2 cut(s) 825, 1623
BsgI GTGCAG 5 cut(s) 47, 318, 566, 1164, 1851
BshFI GGCC 4 cut(s) 5, 18, 242, 691
BsiHKAI GWGCWC 3 cut(s) 643, 1457, 1672
BslFI GGGAC 2 cut(s) 420, 1141
BslI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1505, 1918
BsmAI GTCTC 6 cut(s) 366, 740, 802, 888, 1553, 1800
BsmFI GGGAC 2 cut(s) 420, 1141
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 4 cut(s) 5, 18, 242, 691
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 3 cut(s) 1062, 1209, 1583
Bsp1286I GDGCHC 6 cut(s) 220, 643, 825, 1347, 1457, 1672
Bsp143I GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
BspACI CCGC 3 cut(s) 449, 660, 1695
BspANI GGCC 4 cut(s) 5, 18, 242, 691
BspCNI CTCAG 3 cut(s) 655, 1342, 1916
BspLI GGNNCC 3 cut(s) 436, 723, 1910
BspMI ACCTGC 3 cut(s) 532, 641, 1153
BspPI GGATC 1 cut(s) 1597
BspQI GCTCTTC 1 cut(s) 1206
BspT104I TTCGAA 3 cut(s) 1062, 1209, 1583
BspTNI GGTCTC 1 cut(s) 366
BsrI ACTGG 5 cut(s) 257, 492, 640, 1566, 1875
BssECI CCNNGG 4 cut(s) 159, 243, 374, 1379
BssMI GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
BssT1I CCWWGG 4 cut(s) 159, 243, 374, 1379
Bst2UI CCWGG 4 cut(s) 382, 420, 672, 1758
Bst4CI ACNGT 6 cut(s) 899, 980, 1242, 1431, 1667, 1840
Bst6I CTCTTC 1 cut(s) 1206
BstBI TTCGAA 3 cut(s) 1062, 1209, 1583
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 6 cut(s) 597, 642, 1095, 1350, 1449, 1903
BstHHI GCGC 2 cut(s) 710, 1849
BstKTI GATC 8 cut(s) 55, 238, 466, 787, 841, 1592, 1779, 1918
BstMAI GTCTC 6 cut(s) 366, 740, 802, 888, 1553, 1800
BstMBI GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
BstMWI GCNNNNNNNGC 9 cut(s) 341, 647, 719, 887, 1342, 1351, 1701, 1855, 1871
BstNI CCWGG 4 cut(s) 382, 420, 672, 1758
BstNSI RCATGY 3 cut(s) 1358, 1465, 1601
BstSCI CCNGG 4 cut(s) 380, 418, 670, 1756
BstSLI GKGCMC 4 cut(s) 220, 1347, 1457, 1672
BstV1I GCAGC 9 cut(s) 295, 722, 856, 970, 1094, 1319, 1507, 1510, 1852
BstV2I GAAGAC 1 cut(s) 1668
BstX2I RGATCY 1 cut(s) 1589
BstXI CCANNNNNNTGG 1 cut(s) 1724
BstYI RGATCY 1 cut(s) 1589
Bsu36I CCTNAGG 1 cut(s) 1903
BsuI GTATCC 2 cut(s) 408, 1621
BsuRI GGCC 4 cut(s) 5, 18, 242, 691
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 6 cut(s) 96, 985, 1347, 1371, 1672, 1868
BveI ACCTGC 3 cut(s) 532, 641, 1153
Cac8I GCNNGC 1 cut(s) 720
CaiI CAGNNNCTG 2 cut(s) 890, 1168
CfoI GCGC 2 cut(s) 710, 1849
Cfr13I GGNCC 4 cut(s) 16, 378, 434, 674
CseI GACGC 1 cut(s) 1010
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 2 cut(s) 993, 1238
CviQI GTAC 2 cut(s) 993, 1238
DdeI CTNAG 6 cut(s) 597, 642, 1095, 1350, 1449, 1903
DpnI GATC 8 cut(s) 54, 237, 465, 786, 840, 1591, 1778, 1917
DpnII GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
DraI TTTAAA 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 4 cut(s) 159, 243, 374, 1379
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 643, 825
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 378, 434, 674
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 3 cut(s) 94, 330, 1512
Eco81I CCTNAGG 1 cut(s) 1903
EcoICRI GAGCTC 1 cut(s) 641
EcoRII CCWGG 4 cut(s) 380, 418, 670, 1756
EcoT14I CCWWGG 4 cut(s) 159, 243, 374, 1379
EcoT22I ATGCAT 1 cut(s) 1706
EcoT38I GRGCYC 2 cut(s) 643, 825
ErhI CCWWGG 4 cut(s) 159, 243, 374, 1379
FalI AAGNNNNNCTT 4 cut(s) 697, 729, 1596, 1628
FaqI GGGAC 2 cut(s) 420, 1141
FbaI TGATCA 4 cut(s) 784, 838, 1776, 1915
Fnu4HI GCNGC 9 cut(s) 284, 711, 845, 984, 1108, 1308, 1521, 1524, 1866
FriOI GRGCYC 2 cut(s) 643, 825
Fsp4HI GCNGC 9 cut(s) 284, 711, 845, 984, 1108, 1308, 1521, 1524, 1866
FspBI CTAG 4 cut(s) 213, 375, 854, 1859
GlaI GCGC 2 cut(s) 709, 1848
GluI GCNGC 9 cut(s) 284, 711, 845, 984, 1108, 1308, 1521, 1524, 1866
GsaI CCCAGC 2 cut(s) 829, 1627
GsuI CTGGAG 2 cut(s) 657, 912
HaeIII GGCC 4 cut(s) 5, 18, 242, 691
HgaI GACGC 1 cut(s) 1010
HhaI GCGC 2 cut(s) 710, 1849
Hin6I GCGC 2 cut(s) 708, 1847
HinP1I GCGC 2 cut(s) 708, 1847
HincII GTYRAC 3 cut(s) 25, 1441, 1683
HindII GTYRAC 3 cut(s) 25, 1441, 1683
HindIII AAGCTT 1 cut(s) 1334
HinfI GANTC 5 cut(s) 953, 1322, 1491, 1793, 1810
HphI GGTGA 2 cut(s) 88, 1367
Hpy166II GTNNAC 7 cut(s) 25, 186, 293, 1441, 1455, 1670, 1683
Hpy188I TCNGA 6 cut(s) 136, 468, 789, 1170, 1427, 1490
Hpy8I GTNNAC 7 cut(s) 25, 186, 293, 1441, 1455, 1670, 1683
Hpy99I CGWCG 2 cut(s) 369, 1026
HpyAV CCTTC 3 cut(s) 681, 1334, 1579
HpyCH4III ACNGT 6 cut(s) 899, 980, 1242, 1431, 1667, 1840
HpyCH4IV ACGT 3 cut(s) 289, 1130, 1262
HpyF10VI GCNNNNNNNGC 9 cut(s) 341, 647, 719, 887, 1342, 1351, 1701, 1855, 1871
HpyF3I CTNAG 6 cut(s) 597, 642, 1095, 1350, 1449, 1903
HpySE526I ACGT 3 cut(s) 289, 1130, 1262
HspAI GCGC 2 cut(s) 708, 1847
Ksp22I TGATCA 4 cut(s) 784, 838, 1776, 1915
Kzo9I GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
LguI GCTCTTC 1 cut(s) 1206
LmnI GCTCC 5 cut(s) 638, 727, 887, 1472, 1908
Lsp1109I GCAGC 9 cut(s) 295, 722, 856, 970, 1094, 1319, 1507, 1510, 1852
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 4 cut(s) 213, 375, 854, 1859
MaeII ACGT 3 cut(s) 289, 1130, 1262
MaeIII GTNAC 5 cut(s) 480, 614, 849, 1412, 1787
MalI GATC 8 cut(s) 54, 237, 465, 786, 840, 1591, 1778, 1917
MboI GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 1589
MhlI GDGCHC 6 cut(s) 220, 643, 825, 1347, 1457, 1672
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 7, 221, 439, 681, 813, 1068, 1252, 1617, 1733
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 962, 1802, 1819
MmeI TCCRAC 1 cut(s) 1450
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1706
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 173, 695, 1200, 1467
MslI CAYNNNNRTG 2 cut(s) 1460, 1722
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 4 cut(s) 382, 420, 672, 1758
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 4 cut(s) 382, 420, 672, 1758
MwoI GCNNNNNNNGC 9 cut(s) 341, 647, 719, 887, 1342, 1351, 1701, 1855, 1871
NdeII GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
NlaIV GGNNCC 3 cut(s) 436, 723, 1910
NmuCI GTSAC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 1706
NspI RCATGY 3 cut(s) 1358, 1465, 1601
NspV TTCGAA 3 cut(s) 1062, 1209, 1583
PaqCI CACCTGC 1 cut(s) 532
PceI AGGCCT 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 1206
PctI GAATGC 1 cut(s) 1216
PfeI GAWTC 2 cut(s) 1322, 1491
PflMI CCANNNNNTGG 2 cut(s) 635, 683
PfoI TCCNGGA 1 cut(s) 1756
PkrI GCNGC 9 cut(s) 285, 712, 846, 985, 1109, 1309, 1522, 1525, 1867
PleI GAGTC 3 cut(s) 961, 1801, 1818
PpsI GAGTC 3 cut(s) 961, 1801, 1818
Psp124BI GAGCTC 1 cut(s) 643
Psp1406I AACGTT 1 cut(s) 1262
Psp6I CCWGG 4 cut(s) 380, 418, 670, 1756
PspFI CCCAGC 2 cut(s) 825, 1623
PspGI CCWGG 4 cut(s) 380, 418, 670, 1756
PspN4I GGNNCC 3 cut(s) 436, 723, 1910
PspPI GGNCC 4 cut(s) 16, 378, 434, 674
PstNI CAGNNNCTG 2 cut(s) 890, 1168
PsuI RGATCY 1 cut(s) 1589
RsaI GTAC 2 cut(s) 994, 1239
RsaNI GTAC 2 cut(s) 993, 1238
RseI CAYNNNNRTG 2 cut(s) 1460, 1722
SacI GAGCTC 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 1206
SaqAI TTAA 4 cut(s) 173, 695, 1200, 1467
SatI GCNGC 9 cut(s) 284, 711, 845, 984, 1108, 1308, 1521, 1524, 1866
Sau3AI GATC 8 cut(s) 52, 235, 463, 784, 838, 1589, 1776, 1915
Sau96I GGNCC 4 cut(s) 16, 378, 434, 674
SchI GAGTC 3 cut(s) 962, 1802, 1819
ScrFI CCNGG 4 cut(s) 382, 420, 672, 1758
SduI GDGCHC 6 cut(s) 220, 643, 825, 1347, 1457, 1672
SexAI ACCWGGT 1 cut(s) 418
SfuI TTCGAA 3 cut(s) 1062, 1209, 1583
SinI GGWCC 3 cut(s) 378, 434, 674
SmiMI CAYNNNNRTG 2 cut(s) 1460, 1722
SmlI CTYRAG 3 cut(s) 521, 805, 1799
SmoI CTYRAG 3 cut(s) 521, 805, 1799
Sse9I AATT 9 cut(s) 7, 221, 439, 681, 813, 1068, 1252, 1617, 1733
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 3 cut(s) 449, 660, 1695
SspI AATATT 2 cut(s) 529, 1514
SspMI CTAG 4 cut(s) 213, 375, 854, 1859
SstI GAGCTC 1 cut(s) 643
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 4 cut(s) 380, 418, 670, 1756
StyI CCWWGG 4 cut(s) 159, 243, 374, 1379
TaaI ACNGT 6 cut(s) 899, 980, 1242, 1431, 1667, 1840
TaiI ACGT 3 cut(s) 292, 1133, 1265
TaqI TCGA 6 cut(s) 364, 1062, 1209, 1501, 1572, 1583
TasI AATT 9 cut(s) 7, 221, 439, 681, 813, 1068, 1252, 1617, 1733
TfiI GAWTC 2 cut(s) 1322, 1491
Tru1I TTAA 4 cut(s) 173, 695, 1200, 1467
Tru9I TTAA 4 cut(s) 173, 695, 1200, 1467
TscAI CASTG 6 cut(s) 103, 985, 1354, 1371, 1672, 1875
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 9 cut(s) 283, 710, 844, 983, 1107, 1307, 1520, 1523, 1865
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 8 cut(s) 192, 939, 1107, 1167, 1389, 1434, 1725, 1742
TspGWI ACGGA 1 cut(s) 1687
TspRI CASTG 6 cut(s) 103, 985, 1354, 1371, 1672, 1875
Van91I CCANNNNNTGG 2 cut(s) 635, 683
VneI GTGCAC 2 cut(s) 1453, 1668
VpaK11BI GGWCC 3 cut(s) 378, 434, 674
XapI RAATTY 3 cut(s) 1068, 1252, 1733
XceI RCATGY 3 cut(s) 1358, 1465, 1601
XcmI CCANNNNNNNNNTGG 1 cut(s) 1502
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 4 cut(s) 213, 375, 854, 1859
Zsp2I ATGCAT 1 cut(s) 1706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.