Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007461

Physical Location & Seq

Genomic Coordinates Reverse (-)

39494622 .. 39498800

Gene Structure 4179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGACGCGGAAGCAGAAGGCTGAGAACAAGGCACATGATGGAGAGCAACCTCCAAAGAAGCCTAGGGCTGATGATCACAATGGCCATGCAAATGGTAAAGCTTTACCTGCTGAGTTTGAGGAACTGTATTCTGCTGTCAAAGGGCATTTGTCAACAGAACAAATGCGAGAAATCTTGGAAGCTAATGATCAAGACTCTTCTGGCTCAGATGCTGCTGTTCTAAGAAAATGCCAAGATCTGCTATTCTATGGGCCATTAGATAGTTGTCGTATTTGCAATGGTAAATTAGAGTTCAATGGTATACGCTATTCTTGCACCGGAACTTATAGCGAGTGGGCTTCTTGTACTTTCAACACGAGGGATCCACCAAGGAAGCAGGAAGCGATCAAGTTACCTGAGAGTCTTGAGAAGTCTCCTGCTTCAGATTTGCTAAAGAAATATCAGGACCCAAGTCGCCGGCCCAAGAGGGATTTAAGCACTCCTGATAAGCCCTTCACTGGGATGTTAATTTCTTTAATGGGCCGTCTTACTAGATCACATGTATGTAGGACAGTTGATTTACAAACCGTCTTATTTGTCATTTCACGCTGTGTACTGATCATGCTTTCATTACCATTGCAGCAATACTGGAGACAGGAAGTAGATAAACATGGAGGAAAGGTTGCCAACCATGTGATTGGGACCTTTGCAGGTGTGACATGCCTAATTGTGTCTCCTGCGGAACGAGAACGCGGCGGCACAAATAAACTGGCTGAAGCAATGGAGAGAGGGATACCTGTAGTAAGTGAACAGTGGCTGATTGATAGCATAGAAAGACAAGAACCCCAGCCTCTCGAAGCATATGAAATTGCTAGTGATCTTGCTCCTGATGGCAGAGGAATCCCATGGGACAAAATGGATCCCAGTGAAGAGGCAATTGAGTCACTTTCAGCAGAACTCAAGCTTTATGGGAAGAGAGCTGTCTACAAAGATACGAAACTGCAGGAGCAAGGCGGAAAAATCTTCGAGAGGGATGGGACATTGTACAACTGTGCCTTCTCACATTGTGATCTAGGACGAAAACTGAACGATTATTGCATCTTGCAACTGATTATGGTGCCAGAGAACAGCCTGAACTTGTACTACAAGAAAGGCAGAGTTGGGGATGACCCCAATGCAGAGGAAAGGCTTGAAGAATGGAAGAATGTGGATGATGCTGTGAAAGAGTTTGTTAAAATATTTGAGGAAGTAACCGGAAATGAGTTTGAACCATGGGAAAGAGAGAAGAAGATCCAGAAGAAGCCATTTAAGTTTTACCCAATAGACATGGACGATGGAGTTGAAGTAAGACATGGAGGACTTGGTCTTCGACAGCTGGGAGTTGCTGCTACACATTGCAAACTTCAGCCCGAGGTTGCAAATTTTATGAAGATCCTATGCAGTCAGGAGGTTTACAAATATGCTCTGATGGAGATGGGATTGGATGCCCCAGAATTGCCAATGGGGATGCTTACCGATGTCCACCTAAAAAGATGTGAGGATGTTCTTCAAGAGTTTGTGGAGAAACTGAAGTCAATGAAGGAATCAGGGCCAGAGTCTGAGGCTGTTTGGTCGGACTTTAGCCAAAGATGGTTTACCCTGCTGCACTCTACTAGGCCTTTCATATTCAGGAACTTCCAGGAAGTTGCAGATCATGCTGCTGCTGCACTGGAGACTGTTCGGGACATAACTCTGTCCTCACATCTTATTGGAGACATGAGTGGAGCTACCATTGATGATCCCTTGTCAGATAGATGTAGCAAATTGGGATGCTCAATCTCCCCACTTGATAAGGAATCCGATGATTACAAAATGATTCTGAAGTACCTGGACAAGACCTATGAACCTGTCAAAGTTGGAGATATTGAATACGGGGTGTCTGTGGAGAACATATTCGTTGTTGAATCAAATGCCTGTCCATCTTTGGATGAAATAAAGAAGTTGCCTAACAAATTTCTCCTATGGTGTGGGACACGGAGCTCAAATCTGATGAGGCACTTGAATAAGGGTTTCTTGCCAGCAATATGCTCTCTCCCTGTCCCAGGCTATATGTTTGGGAAAGCAATTGTTTGCTCTGATACTGCCGCAGAGGCTGCAAGGTATGGTTATACTGCTGTGGACAGACCAGAGGGTTTCTTAGTTTTGGCTGTGGCTTCTCTAGGTGAAGAGATTATTGAGTTGAAAAACCCACCAGAGGACACAAAATCTTTAGAGGACAAGAAACTTGGAGTGAAGTGCATAGGGAAAAAGAAGACTGATGAATCGGAGCACTTTGTATGGCATGATTATATCAAAGTTCCCTGTGGACGATTAGTGCCTTCAGATAATAAAGACAGCATTGTCGAGTATAACGAGTATGCTGTCTATGATCCCAAGCAGACATGCATAAGGTTCTTGGTGGGTGTGAAGTATGAAGAGAAGGATGCTGTCATGGACACCGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT BRCT_2 PADR1 PARP PARP_reg WGR

Protein Analysis

821

Amino Acids

92.71

Weight (kDa)

5.35

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADR1_N	PF21728	38 - 84	2.1e-12	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	86 - 125	8e-14	PADR1 domain, zinc ribbon fold
WGR	PF05406	342 - 420	1.1e-08	WGR domain
PARP_reg	PF02877	459 - 590	8.3e-24	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	606 - 809	3.8e-50	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22470
fragaria_vesca	FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670
malus_domestica	MD03G1142500.v1.1
prunus_persica	Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1
pyrus_communis	pycom03g09710
rosa_chinensis	RchiOBHm_Chr5g0044231
rosa_laevigata	RLG00000034257
rosa_multiflora	Rmu_sc0000776.1_g000071
rosa_roxburghii	Rroxscaffold_1G00036790
rosa_rugosa	Rorug05G0212700
rosa_samantha	Rh5AG296800 Rh5BG304300 Rh5CG331300 Rh5DG313100
rosa_wichuraiana	Rw5G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	680
AasI	GACNNNNNNGTC	1 cut(s)	2357
Acc36I	ACCTGC	2 cut(s)	115, 680
AccB1I	GGYRCC	1 cut(s)	1096
AccI	GTMKAC	2 cut(s)	301, 963
AccII	CGCG	2 cut(s)	7, 732
AciI	CCGC	6 cut(s)	7, 719, 732, 735, 993, 2103
AclWI	GGATC	8 cut(s)	356, 369, 893, 906, 1264, 1405, 1751, 2381
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	1399, 1970
AcuI	CTGAAG	6 cut(s)	405, 774, 1367, 1568, 1859, 2322
AdeI	CACNNNGTG	2 cut(s)	590, 1046
AfaI	GTAC	5 cut(s)	346, 594, 1025, 1121, 1844
AfiI	CCNNNNNNNGG	4 cut(s)	497, 498, 2060, 2212
AflIII	ACRYGT	1 cut(s)	538
AjnI	CCWGG	3 cut(s)	1656, 1845, 2059
AluBI	AGCT	7 cut(s)	101, 182, 943, 959, 1354, 1745, 1998
AluI	AGCT	7 cut(s)	101, 182, 943, 959, 1354, 1745, 1998
Alw21I	GWGCWC	2 cut(s)	2000, 2289
Alw26I	GTCTC	5 cut(s)	417, 625, 717, 1685, 1725
AlwI	GGATC	8 cut(s)	356, 369, 893, 906, 1264, 1405, 1751, 2381
AlwNI	CAGNNNCTG	4 cut(s)	212, 796, 1577, 2111
Ama87I	CYCGRG	1 cut(s)	1388
AoxI	GGCC	6 cut(s)	82, 251, 458, 520, 1568, 1634
ApeKI	GCWGC	8 cut(s)	212, 619, 1364, 1621, 1676, 1679, 1682, 2111
ApoI	RAATTY	2 cut(s)	1399, 1970
ArsI	GACNNNNNNTTYG	2 cut(s)	1329, 1361
Asp700I	GAANNNNTTC	1 cut(s)	1910
AspA2I	CCTAGG	1 cut(s)	62
AspS9I	GGNCC	6 cut(s)	251, 445, 459, 520, 681, 1568
AsuHPI	GGTGA	1 cut(s)	2192
AvaI	CYCGRG	1 cut(s)	1388
AvaII	GGWCC	2 cut(s)	445, 681
AvrII	CCTAGG	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	84
BamHI	GGATCC	2 cut(s)	361, 898
BanI	GGYRCC	1 cut(s)	1096
BanII	GRGCYC	1 cut(s)	2000
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	2 cut(s)	1337, 2276
Bbv12I	GWGCWC	2 cut(s)	2000, 2289
BbvI	GCAGC	8 cut(s)	199, 631, 1351, 1608, 1663, 1666, 1669, 2098
BccI	CCATC	8 cut(s)	32, 863, 1007, 1307, 1441, 1447, 1602, 1945
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	3 cut(s)	1658, 1847, 2061
BciVI	GTATCC	1 cut(s)	765
BclI	TGATCA	3 cut(s)	73, 187, 597
BcoDI	GTCTC	5 cut(s)	417, 625, 717, 1685, 1725
BfaI	CTAG	6 cut(s)	63, 531, 852, 1052, 1632, 2177
BfmI	CTRYAG	2 cut(s)	777, 980
BfuAI	ACCTGC	2 cut(s)	115, 680
BfuI	GTATCC	1 cut(s)	765
BglI	GCCNNNNNGGC	1 cut(s)	2108
BglII	AGATCT	1 cut(s)	235
BlnI	CCTAGG	1 cut(s)	62
Bme1390I	CCNGG	3 cut(s)	1658, 1847, 2061
Bme18I	GGWCC	2 cut(s)	445, 681
BmeT110I	CYCGRG	1 cut(s)	1388
BmgT120I	GGNCC	6 cut(s)	251, 445, 459, 520, 681, 1568
BmiI	GGNNCC	5 cut(s)	363, 447, 682, 900, 1098
BmrFI	CCNGG	3 cut(s)	1658, 1847, 2061
BmrI	ACTGGG	2 cut(s)	507, 897
BmsI	GCATC	7 cut(s)	199, 1086, 1183, 1453, 1476, 1778, 2431
BmuI	ACTGGG	2 cut(s)	507, 897
BoxI	GACNNNNGTC	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	1337, 2276
BpmI	CTGGAG	2 cut(s)	649, 1709
BpuEI	CTTGAG	2 cut(s)	425, 923
BsaJI	CCNNGG	7 cut(s)	62, 368, 884, 1250, 1389, 2059, 2457
BsaWI	WCCGGW	2 cut(s)	317, 1232
BsaXI	ACNNNNNCTCC	4 cut(s)	645, 675, 1308, 1338
Bsc4I	CCNNNNNNNGG	4 cut(s)	497, 498, 2060, 2212
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	5 cut(s)	502, 632, 753, 903, 1692
Bse3DI	GCAATG	4 cut(s)	283, 614, 765, 1372
BseBI	CCWGG	3 cut(s)	1658, 1847, 2061
BseDI	CCNNGG	7 cut(s)	62, 368, 884, 1250, 1389, 2059, 2457
BseLI	CCNNNNNNNGG	4 cut(s)	497, 498, 2060, 2212
BseMI	GCAATG	4 cut(s)	283, 614, 765, 1372
BseMII	CTCAG	5 cut(s)	12, 102, 219, 387, 1569
BseNI	ACTGG	5 cut(s)	502, 632, 753, 903, 1692
BseXI	GCAGC	8 cut(s)	199, 631, 1351, 1608, 1663, 1666, 1669, 2098
BseYI	CCCAGC	2 cut(s)	825, 1354
BsgI	GTGCAG	2 cut(s)	1607, 1668
Bsh1236I	CGCG	2 cut(s)	7, 732
BshFI	GGCC	6 cut(s)	84, 253, 460, 522, 1570, 1636
BshNI	GGYRCC	1 cut(s)	1096
BsiHKAI	GWGCWC	2 cut(s)	2000, 2289
BsiHKCI	CYCGRG	1 cut(s)	1388
BsiSI	CCGG	3 cut(s)	318, 457, 1233
BslFI	GGGAC	6 cut(s)	694, 902, 1030, 1715, 2002, 2042
BslI	CCNNNNNNNGG	4 cut(s)	497, 498, 2060, 2212
BsmAI	GTCTC	5 cut(s)	417, 625, 717, 1685, 1725
BsmFI	GGGAC	6 cut(s)	694, 902, 1030, 1715, 2002, 2042
BsnI	GGCC	6 cut(s)	84, 253, 460, 522, 1570, 1636
BsoBI	CYCGRG	1 cut(s)	1388
Bsp1286I	GDGCHC	2 cut(s)	2000, 2289
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp19I	CCATGG	2 cut(s)	884, 1250
BspACI	CCGC	6 cut(s)	7, 719, 732, 735, 993, 2103
BspANI	GGCC	6 cut(s)	84, 253, 460, 522, 1570, 1636
BspCNI	CTCAG	5 cut(s)	13, 103, 218, 388, 1570
BspFNI	CGCG	2 cut(s)	7, 732
BspLI	GGNNCC	5 cut(s)	363, 447, 682, 900, 1098
BspMAI	CTGCAG	1 cut(s)	984
BspMI	ACCTGC	2 cut(s)	115, 680
BspPI	GGATC	8 cut(s)	356, 369, 893, 906, 1264, 1405, 1751, 2381
BspT107I	GGYRCC	1 cut(s)	1096
BsrDI	GCAATG	4 cut(s)	283, 614, 765, 1372
BsrFI	RCCGGY	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	5 cut(s)	502, 632, 753, 903, 1692
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	7 cut(s)	62, 368, 884, 1250, 1389, 2059, 2457
BssNAI	GTATAC	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	355
BssT1I	CCWWGG	4 cut(s)	62, 368, 884, 1250
Bst1107I	GTATAC	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	3 cut(s)	1658, 1847, 2061
Bst4CI	ACNGT	6 cut(s)	126, 553, 568, 792, 1031, 1696
Bst6I	CTCTTC	5 cut(s)	202, 903, 947, 2178, 2427
BstAPI	GCANNNNNTGC	2 cut(s)	1673, 2111
BstAUI	TGTACA	1 cut(s)	1023
BstC8I	GCNNGC	2 cut(s)	458, 2037
BstDEI	CTNAG	7 cut(s)	21, 111, 205, 221, 396, 1578, 2155
BstDSI	CCRYGG	2 cut(s)	884, 1250
BstENI	CCTNNNNNAGG	1 cut(s)	2058
BstFNI	CGCG	2 cut(s)	7, 732
BstMAI	GTCTC	5 cut(s)	417, 625, 717, 1685, 1725
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 312, 1673, 1682, 2108, 2111
BstNI	CCWGG	3 cut(s)	1658, 1847, 2061
BstNSI	RCATGY	3 cut(s)	542, 702, 2403
BstPAI	GACNNNNGTC	1 cut(s)	450
BstSCI	CCNGG	3 cut(s)	1656, 1845, 2059
BstSFI	CTRYAG	2 cut(s)	777, 980
BstUI	CGCG	2 cut(s)	7, 732
BstV1I	GCAGC	8 cut(s)	199, 631, 1351, 1608, 1663, 1666, 1669, 2098
BstV2I	GAAGAC	2 cut(s)	1337, 2276
BstX2I	RGATCY	5 cut(s)	235, 361, 898, 1269, 1410
BstXI	CCANNNNNNTGG	2 cut(s)	92, 677
BstYI	RGATCY	5 cut(s)	235, 361, 898, 1269, 1410
BstZ17I	GTATAC	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	6 cut(s)	84, 253, 460, 522, 1570, 1636
BtgI	CCRYGG	2 cut(s)	884, 1250
BtsIMutI	CAGTG	4 cut(s)	495, 797, 910, 1685
BveI	ACCTGC	2 cut(s)	115, 680
Cac8I	GCNNGC	2 cut(s)	458, 2037
CaiI	CAGNNNCTG	4 cut(s)	212, 796, 1577, 2111
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	6 cut(s)	251, 445, 459, 520, 681, 1568
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	5 cut(s)	345, 593, 1024, 1120, 1843
CviQI	GTAC	5 cut(s)	345, 593, 1024, 1120, 1843
DdeI	CTNAG	7 cut(s)	21, 111, 205, 221, 396, 1578, 2155
DraIII	CACNNNGTG	2 cut(s)	590, 1046
DrdI	GACNNNNNNGTC	1 cut(s)	2357
DseDI	GACNNNNNNGTC	1 cut(s)	2357
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	5 cut(s)	202, 903, 947, 2178, 2427
EarI	CTCTTC	5 cut(s)	202, 903, 947, 2178, 2427
EciI	GGCGGA	1 cut(s)	1008
Ecl136II	GAGCTC	1 cut(s)	1998
Eco130I	CCWWGG	4 cut(s)	62, 368, 884, 1250
Eco147I	AGGCCT	1 cut(s)	1636
Eco24I	GRGCYC	1 cut(s)	2000
Eco47I	GGWCC	2 cut(s)	445, 681
Eco53kI	GAGCTC	1 cut(s)	1998
Eco57I	CTGAAG	6 cut(s)	405, 774, 1367, 1568, 1859, 2322
Eco88I	CYCGRG	1 cut(s)	1388
EcoICRI	GAGCTC	1 cut(s)	1998
EcoNI	CCTNNNNNAGG	1 cut(s)	2058
EcoO109I	RGGNCCY	2 cut(s)	445, 681
EcoRII	CCWGG	3 cut(s)	1656, 1845, 2059
EcoT14I	CCWWGG	4 cut(s)	62, 368, 884, 1250
EcoT22I	ATGCAT	1 cut(s)	2405
EcoT38I	GRGCYC	1 cut(s)	2000
ErhI	CCWWGG	4 cut(s)	62, 368, 884, 1250
FalI	AAGNNNNNCTT	2 cut(s)	2015, 2047
FaqI	GGGAC	6 cut(s)	694, 902, 1030, 1715, 2002, 2042
FauNDI	CATATG	1 cut(s)	841
FbaI	TGATCA	3 cut(s)	73, 187, 597
FblI	GTMKAC	2 cut(s)	301, 963
FriOI	GRGCYC	1 cut(s)	2000
FspBI	CTAG	6 cut(s)	63, 531, 852, 1052, 1632, 2177
GsaI	CCCAGC	2 cut(s)	829, 1358
GsuI	CTGGAG	2 cut(s)	649, 1709
HaeIII	GGCC	6 cut(s)	84, 253, 460, 522, 1570, 1636
HapII	CCGG	3 cut(s)	318, 457, 1233
HgaI	GACGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HindIII	AAGCTT	2 cut(s)	99, 941
HpaII	CCGG	3 cut(s)	318, 457, 1233
HphI	GGTGA	1 cut(s)	2192
HpyAV	CCTTC	6 cut(s)	10, 502, 1045, 1552, 2346, 2431
HpyCH4III	ACNGT	6 cut(s)	126, 553, 568, 792, 1031, 1696
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 312, 1673, 1682, 2108, 2111
HpyF3I	CTNAG	7 cut(s)	21, 111, 205, 221, 396, 1578, 2155
KroI	GCCGGC	1 cut(s)	456
KroNI	GCCGGC	1 cut(s)	458
Ksp22I	TGATCA	3 cut(s)	73, 187, 597
LmnI	GCTCC	5 cut(s)	868, 985, 1742, 1995, 2284
Lsp1109I	GCAGC	8 cut(s)	199, 631, 1351, 1608, 1663, 1666, 1669, 2098
LweI	GCATC	7 cut(s)	199, 1086, 1183, 1453, 1476, 1778, 2431
MaeI	CTAG	6 cut(s)	63, 531, 852, 1052, 1632, 2177
MaeIII	GTNAC	4 cut(s)	390, 694, 921, 1228
MfeI	CAATTG	2 cut(s)	915, 2082
MflI	RGATCY	5 cut(s)	235, 361, 898, 1269, 1410
MhlI	GDGCHC	2 cut(s)	2000, 2289
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	4 cut(s)	188, 409, 929, 1583
MmeI	TCCRAC	2 cut(s)	1572, 1855
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	2405
MroNI	GCCGGC	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	1910
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	5 cut(s)	473, 506, 515, 1212, 1287
MslI	CAYNNNNRTG	3 cut(s)	90, 500, 541
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	1354
MspI	CCGG	3 cut(s)	318, 457, 1233
MspR9I	CCNGG	3 cut(s)	1658, 1847, 2061
MunI	CAATTG	2 cut(s)	915, 2082
MvaI	CCWGG	3 cut(s)	1658, 1847, 2061
MvnI	CGCG	2 cut(s)	7, 732
MwoI	GCNNNNNNNGC	6 cut(s)	107, 312, 1673, 1682, 2108, 2111
NaeI	GCCGGC	1 cut(s)	458
NcoI	CCATGG	2 cut(s)	884, 1250
NdeI	CATATG	1 cut(s)	841
NgoMIV	GCCGGC	1 cut(s)	456
NlaIV	GGNNCC	5 cut(s)	363, 447, 682, 900, 1098
NmuCI	GTSAC	2 cut(s)	694, 921
NsiI	ATGCAT	1 cut(s)	2405
NspI	RCATGY	3 cut(s)	542, 702, 2403
PaqCI	CACCTGC	1 cut(s)	680
PceI	AGGCCT	1 cut(s)	1636
PciI	ACATGT	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	2367
PdiI	GCCGGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	1910
PfeI	GAWTC	6 cut(s)	879, 1562, 1814, 1834, 1922, 2279
PflFI	GACNNNGTC	1 cut(s)	1341
PfoI	TCCNGGA	1 cut(s)	1656
PleI	GAGTC	4 cut(s)	188, 408, 928, 1582
PpsI	GAGTC	4 cut(s)	188, 408, 928, 1582
PpuMI	RGGWCCY	2 cut(s)	445, 681
PscI	ACATGT	1 cut(s)	538
PshAI	GACNNNNGTC	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	2000
Psp5II	RGGWCCY	2 cut(s)	445, 681
Psp6I	CCWGG	3 cut(s)	1656, 1845, 2059
PspFI	CCCAGC	2 cut(s)	825, 1354
PspGI	CCWGG	3 cut(s)	1656, 1845, 2059
PspN4I	GGNNCC	5 cut(s)	363, 447, 682, 900, 1098
PspPI	GGNCC	6 cut(s)	251, 445, 459, 520, 681, 1568
PspPPI	RGGWCCY	2 cut(s)	445, 681
PsrI	GAACNNNNNNTAC	2 cut(s)	1106, 1138
PstI	CTGCAG	1 cut(s)	984
PstNI	CAGNNNCTG	4 cut(s)	212, 796, 1577, 2111
PsuI	RGATCY	5 cut(s)	235, 361, 898, 1269, 1410
PsyI	GACNNNGTC	1 cut(s)	1341
PvuII	CAGCTG	1 cut(s)	1354
RsaI	GTAC	5 cut(s)	346, 594, 1025, 1121, 1844
RsaNI	GTAC	5 cut(s)	345, 593, 1024, 1120, 1843
RseI	CAYNNNNRTG	3 cut(s)	90, 500, 541
SacI	GAGCTC	1 cut(s)	2000
SaqAI	TTAA	5 cut(s)	473, 506, 515, 1212, 1287
Sau96I	GGNCC	6 cut(s)	251, 445, 459, 520, 681, 1568
SchI	GAGTC	4 cut(s)	188, 409, 929, 1583
ScrFI	CCNGG	3 cut(s)	1658, 1847, 2061
SduI	GDGCHC	2 cut(s)	2000, 2289
SfaNI	GCATC	7 cut(s)	199, 1086, 1183, 1453, 1476, 1778, 2431
SfcI	CTRYAG	2 cut(s)	777, 980
SinI	GGWCC	2 cut(s)	445, 681
SmiMI	CAYNNNNRTG	3 cut(s)	90, 500, 541
SmlI	CTYRAG	2 cut(s)	404, 938
SmoI	CTYRAG	2 cut(s)	404, 938
SseBI	AGGCCT	1 cut(s)	1636
SsiI	CCGC	6 cut(s)	7, 719, 732, 735, 993, 2103
SspI	AATATT	1 cut(s)	1218
SspMI	CTAG	6 cut(s)	63, 531, 852, 1052, 1632, 2177
SstI	GAGCTC	1 cut(s)	2000
StuI	AGGCCT	1 cut(s)	1636
StyD4I	CCNGG	3 cut(s)	1656, 1845, 2059
StyI	CCWWGG	4 cut(s)	62, 368, 884, 1250
TaaI	ACNGT	6 cut(s)	126, 553, 568, 792, 1031, 1696
TaqI	TCGA	4 cut(s)	834, 1005, 1348, 2361
TatI	WGTACW	4 cut(s)	344, 592, 1023, 1119
TauI	GCSGC	3 cut(s)	735, 738, 2105
TfiI	GAWTC	6 cut(s)	879, 1562, 1814, 1834, 1922, 2279
Tru1I	TTAA	5 cut(s)	473, 506, 515, 1212, 1287
Tru9I	TTAA	5 cut(s)	473, 506, 515, 1212, 1287
TscAI	CASTG	4 cut(s)	502, 797, 910, 1692
TseFI	GTSAC	2 cut(s)	694, 921
TseI	GCWGC	8 cut(s)	212, 619, 1364, 1621, 1676, 1679, 1682, 2111
Tsp45I	GTSAC	2 cut(s)	694, 921
TspDTI	ATGAA	9 cut(s)	597, 858, 1421, 1571, 1630, 1875, 1962, 2292, 2445
TspGWI	ACGGA	1 cut(s)	2008
TspRI	CASTG	4 cut(s)	502, 797, 910, 1692
Tth111I	GACNNNGTC	1 cut(s)	1341
VpaK11BI	GGWCC	2 cut(s)	445, 681
XagI	CCTNNNNNAGG	1 cut(s)	2058
XapI	RAATTY	2 cut(s)	1399, 1970
XceI	RCATGY	3 cut(s)	542, 702, 2403
XmaJI	CCTAGG	1 cut(s)	62
XmiI	GTMKAC	2 cut(s)	301, 963
XmnI	GAANNNNTTC	1 cut(s)	1910
XspI	CTAG	6 cut(s)	63, 531, 852, 1052, 1632, 2177
Zsp2I	ATGCAT	1 cut(s)	2405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.