Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016403

Physical Location & Seq

Genomic Coordinates Reverse (-)

63899456 .. 63901452

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGGACCCTGGGCTGTAGATCTGAGAAAGAAGGGAATTTGGCTTAAGCTACTGGTAGAACGAGTTGAGCTTGTTCCAGTTGCTGTTGAGGGAGAGACAGCGGTAGCAGCTAGGAGAAGATCTGAGACTACTCCTGTGCTGGACAAGCACAATAACCAGGAAACACCTACTATAGTCAAGTCCTACTATGACAAAAGAATAATTGGATGCCCTAGTGTTGAAGGAGGTAAACTCCTCCAGCTGCATCTTTTTCTTCCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

87

Amino Acids

9.78

Weight (kDa)

9.06

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016403)

Species	Orthologous Gene IDs
malus_domestica	MD13G1232800.v1.1
rosa_chinensis	RchiOBHm_Chr3g0493471 RchiOBHm_Chr5g0059031
rosa_laevigata	RLG00000002039
rosa_multiflora	Rmu_sc0009682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023510
rosa_rugosa	Rorug05G0220100
rosa_samantha	Rh1AG220100 Rh2AG015800 Rh3BG140000 Rh3CG141700 Rh3CG150100 Rh4AG021900 Rh5BG396800 Rh6BG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	36
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	8, 156
AluBI	AGCT	4 cut(s)	49, 70, 110, 241
AluI	AGCT	4 cut(s)	49, 70, 110, 241
Alw26I	GTCTC	2 cut(s)	89, 119
AlwNI	CAGNNNCTG	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	107, 241
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	119, 228
BciT130I	CCWGG	2 cut(s)	10, 158
BcoDI	GTCTC	2 cut(s)	89, 119
BfaI	CTAG	2 cut(s)	111, 213
BfmI	CTRYAG	2 cut(s)	15, 171
BfrI	CTTAAG	1 cut(s)	44
BglII	AGATCT	2 cut(s)	19, 119
BisI	GCNGC	2 cut(s)	108, 242
BlsI	GCNGC	2 cut(s)	109, 243
Bme1390I	CCNGG	2 cut(s)	10, 158
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 7
BmrFI	CCNGG	2 cut(s)	10, 158
BmsI	GCATC	2 cut(s)	197, 253
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	8, 9
Bse1I	ACTGG	2 cut(s)	57, 77
BseBI	CCWGG	2 cut(s)	10, 158
BseDI	CCNNGG	2 cut(s)	8, 9
BseGI	GGATG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	14, 114
BseNI	ACTGG	2 cut(s)	57, 77
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	119, 228
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	89, 119
BsmFI	GGGAC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	19, 119
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	15, 115
BspLI	GGNNCC	2 cut(s)	6, 7
BspTI	CTTAAG	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	57, 77
BssECI	CCNNGG	2 cut(s)	8, 9
BssMI	GATC	2 cut(s)	19, 119
Bst2UI	CCWGG	2 cut(s)	10, 158
BstAFI	CTTAAG	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	23, 123
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	22, 122
BstMAI	GTCTC	2 cut(s)	89, 119
BstMBI	GATC	2 cut(s)	19, 119
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 145
BstNI	CCWGG	2 cut(s)	10, 158
BstSCI	CCNGG	2 cut(s)	8, 156
BstSFI	CTRYAG	2 cut(s)	15, 171
BstV1I	GCAGC	2 cut(s)	119, 228
BstX2I	RGATCY	2 cut(s)	19, 119
BstYI	RGATCY	2 cut(s)	19, 119
BtsCI	GGATG	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	5
CviJI	RGCY	6 cut(s)	14, 43, 49, 70, 110, 241
CviKI_1	RGCY	6 cut(s)	14, 43, 49, 70, 110, 241
DdeI	CTNAG	2 cut(s)	23, 123
DpnI	GATC	2 cut(s)	21, 121
DpnII	GATC	2 cut(s)	19, 119
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	8, 156
FaiI	YATR	2 cut(s)	173, 189
FaqI	GGGAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	108, 242
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	108, 242
FspBI	CTAG	2 cut(s)	111, 213
GluI	GCNGC	2 cut(s)	108, 242
GsuI	CTGGAG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	24, 124
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	25, 215
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 145
HpyF3I	CTNAG	2 cut(s)	23, 123
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	19, 119
LpnPI	CCDG	8 cut(s)	22, 38, 90, 125, 143, 147, 170, 251
Lsp1109I	GCAGC	2 cut(s)	119, 228
LweI	GCATC	2 cut(s)	197, 253
MaeI	CTAG	2 cut(s)	111, 213
MalI	GATC	2 cut(s)	21, 121
MboI	GATC	2 cut(s)	19, 119
MboII	GAAGA	2 cut(s)	129, 245
MflI	RGATCY	2 cut(s)	19, 119
MluCI	AATT	2 cut(s)	36, 201
MnlI	CCTC	3 cut(s)	82, 218, 245
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	101, 241
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	10, 158
MvaI	CCWGG	2 cut(s)	10, 158
MwoI	GCNNNNNNNGC	2 cut(s)	107, 145
NdeII	GATC	2 cut(s)	19, 119
NlaIV	GGNNCC	2 cut(s)	6, 7
PasI	CCCWGGG	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	109, 243
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	8, 156
PspGI	CCWGG	2 cut(s)	8, 156
PspN4I	GGNNCC	2 cut(s)	6, 7
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	19, 119
PvuII	CAGCTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	2 cut(s)	108, 242
Sau3AI	GATC	2 cut(s)	19, 119
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	2 cut(s)	10, 158
SetI	ASST	6 cut(s)	51, 72, 112, 169, 229, 243
SfaNI	GCATC	2 cut(s)	197, 253
SfcI	CTRYAG	2 cut(s)	15, 171
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	36, 201
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	111, 213
StyD4I	CCNGG	2 cut(s)	8, 156
TasI	AATT	2 cut(s)	36, 201
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	2 cut(s)	107, 241
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	2 cut(s)	111, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.