E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0061981 |
| rosa_laevigata | RLG00000035524 |
| rosa_multiflora | Rmu_sc0000680.1_g000045 Rmu_sc0002296.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00018730 Rroxscaffold_1G00018740 |
| rosa_samantha | Rh5AG368800 Rh5AG406400 Rh5AG406500 Rh5BG420000 Rh5CG402600 Rh5CG444100 Rh5DG435300 Rh6BG228800 |
| rosa_wichuraiana | Rw5G038320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 527, 540 |
| AcsI | RAATTY | 2 cut(s) | 95, 115 |
| AgsI | TTSAA | 1 cut(s) | 280 |
| AjnI | CCWGG | 1 cut(s) | 414 |
| AluBI | AGCT | 4 cut(s) | 6, 83, 492, 505 |
| AluI | AGCT | 4 cut(s) | 6, 83, 492, 505 |
| Alw26I | GTCTC | 1 cut(s) | 308 |
| AlwI | GGATC | 2 cut(s) | 527, 540 |
| AoxI | GGCC | 3 cut(s) | 224, 587, 614 |
| ApeKI | GCWGC | 2 cut(s) | 382, 492 |
| ApoI | RAATTY | 2 cut(s) | 95, 115 |
| AspS9I | GGNCC | 1 cut(s) | 245 |
| AsuHPI | GGTGA | 2 cut(s) | 227, 590 |
| AvaII | GGWCC | 1 cut(s) | 245 |
| BamHI | GGATCC | 1 cut(s) | 532 |
| BbvI | GCAGC | 2 cut(s) | 394, 479 |
| BccI | CCATC | 4 cut(s) | 291, 479, 575, 579 |
| BciT130I | CCWGG | 1 cut(s) | 416 |
| BcoDI | GTCTC | 1 cut(s) | 308 |
| BfaI | CTAG | 3 cut(s) | 132, 557, 596 |
| BfmI | CTRYAG | 1 cut(s) | 90 |
| BisI | GCNGC | 2 cut(s) | 383, 493 |
| BlsI | GCNGC | 2 cut(s) | 384, 494 |
| Bme1390I | CCNGG | 1 cut(s) | 416 |
| Bme18I | GGWCC | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 1 cut(s) | 245 |
| BmiI | GGNNCC | 1 cut(s) | 534 |
| BmrFI | CCNGG | 1 cut(s) | 416 |
| BmsI | GCATC | 1 cut(s) | 443 |
| BpmI | CTGGAG | 3 cut(s) | 83, 258, 437 |
| BsaBI | GATNNNNATC | 1 cut(s) | 433 |
| BsaWI | WCCGGW | 1 cut(s) | 456 |
| Bse3DI | GCAATG | 2 cut(s) | 210, 353 |
| Bse8I | GATNNNNATC | 1 cut(s) | 433 |
| BseBI | CCWGG | 1 cut(s) | 416 |
| BseGI | GGATG | 3 cut(s) | 434, 434, 590 |
| BseJI | GATNNNNATC | 1 cut(s) | 433 |
| BseMI | GCAATG | 2 cut(s) | 210, 353 |
| BseMII | CTCAG | 2 cut(s) | 319, 542 |
| BseXI | GCAGC | 2 cut(s) | 394, 479 |
| BshFI | GGCC | 3 cut(s) | 226, 589, 616 |
| BsiSI | CCGG | 1 cut(s) | 457 |
| BsmAI | GTCTC | 1 cut(s) | 308 |
| BsnI | GGCC | 3 cut(s) | 226, 589, 616 |
| Bsp143I | GATC | 1 cut(s) | 532 |
| BspANI | GGCC | 3 cut(s) | 226, 589, 616 |
| BspCNI | CTCAG | 2 cut(s) | 318, 541 |
| BspLI | GGNNCC | 1 cut(s) | 534 |
| BspMAI | CTGCAG | 1 cut(s) | 94 |
| BspPI | GGATC | 2 cut(s) | 527, 540 |
| BsrDI | GCAATG | 2 cut(s) | 210, 353 |
| BssMI | GATC | 1 cut(s) | 532 |
| Bst2UI | CCWGG | 1 cut(s) | 416 |
| Bst4CI | ACNGT | 1 cut(s) | 521 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 73 |
| BstC8I | GCNNGC | 2 cut(s) | 129, 614 |
| BstDEI | CTNAG | 3 cut(s) | 79, 305, 528 |
| BstF5I | GGATG | 3 cut(s) | 434, 434, 590 |
| BstKTI | GATC | 1 cut(s) | 535 |
| BstMAI | GTCTC | 1 cut(s) | 308 |
| BstMBI | GATC | 1 cut(s) | 532 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 73, 89 |
| BstNI | CCWGG | 1 cut(s) | 416 |
| BstNSI | RCATGY | 2 cut(s) | 131, 275 |
| BstSCI | CCNGG | 1 cut(s) | 414 |
| BstSFI | CTRYAG | 1 cut(s) | 90 |
| BstV1I | GCAGC | 2 cut(s) | 394, 479 |
| BstX2I | RGATCY | 1 cut(s) | 532 |
| BstYI | RGATCY | 1 cut(s) | 532 |
| BsuRI | GGCC | 3 cut(s) | 226, 589, 616 |
| BtsCI | GGATG | 3 cut(s) | 434, 434, 590 |
| BtsIMutI | CAGTG | 1 cut(s) | 313 |
| Cac8I | GCNNGC | 2 cut(s) | 129, 614 |
| Cfr13I | GGNCC | 1 cut(s) | 245 |
| CviAII | CATG | 4 cut(s) | 68, 128, 139, 272 |
| CviJI | RGCY | 8 cut(s) | 6, 83, 226, 233, 492, 505, 589, 616 |
| CviKI_1 | RGCY | 8 cut(s) | 6, 83, 226, 233, 492, 505, 589, 616 |
| DdeI | CTNAG | 3 cut(s) | 79, 305, 528 |
| DpnI | GATC | 1 cut(s) | 534 |
| DpnII | GATC | 1 cut(s) | 532 |
| Eco47I | GGWCC | 1 cut(s) | 245 |
| EcoRII | CCWGG | 1 cut(s) | 414 |
| FaeI | CATG | 4 cut(s) | 71, 131, 142, 275 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 211, 243 |
| FatI | CATG | 4 cut(s) | 67, 127, 138, 271 |
| Fnu4HI | GCNGC | 2 cut(s) | 383, 493 |
| FokI | GGATG | 3 cut(s) | 421, 441, 597 |
| Fsp4HI | GCNGC | 2 cut(s) | 383, 493 |
| FspBI | CTAG | 3 cut(s) | 132, 557, 596 |
| GluI | GCNGC | 2 cut(s) | 383, 493 |
| GsuI | CTGGAG | 3 cut(s) | 83, 258, 437 |
| HaeIII | GGCC | 3 cut(s) | 226, 589, 616 |
| HapII | CCGG | 1 cut(s) | 457 |
| Hin1II | CATG | 4 cut(s) | 71, 131, 142, 275 |
| HinfI | GANTC | 1 cut(s) | 449 |
| HpaII | CCGG | 1 cut(s) | 457 |
| HphI | GGTGA | 2 cut(s) | 227, 590 |
| Hpy166II | GTNNAC | 1 cut(s) | 25 |
| Hpy188I | TCNGA | 4 cut(s) | 114, 379, 401, 454 |
| Hpy188III | TCNNGA | 7 cut(s) | 101, 237, 338, 426, 515, 530, 602 |
| Hpy8I | GTNNAC | 1 cut(s) | 25 |
| HpyAV | CCTTC | 1 cut(s) | 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 521 |
| HpyCH4V | TGCA | 6 cut(s) | 30, 92, 208, 271, 353, 434 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 73, 89 |
| HpyF3I | CTNAG | 3 cut(s) | 79, 305, 528 |
| Hsp92II | CATG | 4 cut(s) | 71, 131, 142, 275 |
| Kzo9I | GATC | 1 cut(s) | 532 |
| LmnI | GCTCC | 3 cut(s) | 64, 326, 418 |
| Lsp1109I | GCAGC | 2 cut(s) | 394, 479 |
| LweI | GCATC | 1 cut(s) | 443 |
| MaeI | CTAG | 3 cut(s) | 132, 557, 596 |
| MaeIII | GTNAC | 4 cut(s) | 134, 186, 345, 521 |
| MalI | GATC | 1 cut(s) | 534 |
| MboI | GATC | 1 cut(s) | 532 |
| MboII | GAAGA | 1 cut(s) | 269 |
| MflI | RGATCY | 1 cut(s) | 532 |
| MluCI | AATT | 4 cut(s) | 95, 106, 115, 164 |
| MmeI | TCCRAC | 1 cut(s) | 223 |
| MnlI | CCTC | 2 cut(s) | 31, 613 |
| MspI | CCGG | 1 cut(s) | 457 |
| MspR9I | CCNGG | 1 cut(s) | 416 |
| MvaI | CCWGG | 1 cut(s) | 416 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 73, 89 |
| NdeII | GATC | 1 cut(s) | 532 |
| NlaIII | CATG | 4 cut(s) | 71, 131, 142, 275 |
| NlaIV | GGNNCC | 1 cut(s) | 534 |
| NmuCI | GTSAC | 1 cut(s) | 521 |
| NspI | RCATGY | 2 cut(s) | 131, 275 |
| PaeI | GCATGC | 1 cut(s) | 131 |
| PfeI | GAWTC | 1 cut(s) | 449 |
| PkrI | GCNGC | 2 cut(s) | 384, 494 |
| Psp6I | CCWGG | 1 cut(s) | 414 |
| PspGI | CCWGG | 1 cut(s) | 414 |
| PspN4I | GGNNCC | 1 cut(s) | 534 |
| PspPI | GGNCC | 1 cut(s) | 245 |
| PstI | CTGCAG | 1 cut(s) | 94 |
| PsuI | RGATCY | 1 cut(s) | 532 |
| SatI | GCNGC | 2 cut(s) | 383, 493 |
| Sau3AI | GATC | 1 cut(s) | 532 |
| Sau96I | GGNCC | 1 cut(s) | 245 |
| ScrFI | CCNGG | 1 cut(s) | 416 |
| SetI | ASST | 8 cut(s) | 8, 42, 85, 345, 417, 494, 507, 580 |
| SfaNI | GCATC | 1 cut(s) | 443 |
| SfcI | CTRYAG | 1 cut(s) | 90 |
| SinI | GGWCC | 1 cut(s) | 245 |
| SphI | GCATGC | 1 cut(s) | 131 |
| Sse9I | AATT | 4 cut(s) | 95, 106, 115, 164 |
| SspI | AATATT | 1 cut(s) | 371 |
| SspMI | CTAG | 3 cut(s) | 132, 557, 596 |
| StyD4I | CCNGG | 1 cut(s) | 414 |
| TaaI | ACNGT | 1 cut(s) | 521 |
| TaqI | TCGA | 2 cut(s) | 295, 507 |
| TasI | AATT | 4 cut(s) | 95, 106, 115, 164 |
| TfiI | GAWTC | 1 cut(s) | 449 |
| TscAI | CASTG | 1 cut(s) | 313 |
| TseFI | GTSAC | 1 cut(s) | 521 |
| TseI | GCWGC | 2 cut(s) | 382, 492 |
| Tsp45I | GTSAC | 1 cut(s) | 521 |
| TspDTI | ATGAA | 1 cut(s) | 381 |
| TspRI | CASTG | 1 cut(s) | 313 |
| VpaK11BI | GGWCC | 1 cut(s) | 245 |
| XapI | RAATTY | 2 cut(s) | 95, 115 |
| XceI | RCATGY | 2 cut(s) | 131, 275 |
| XspI | CTAG | 3 cut(s) | 132, 557, 596 |