Rroxscaffold_1G00018740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016455
Physical Location & Seq
Forward (+)
22874293 .. 22882525
8233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018740.1

Sequence Viewer

Length: 888 bp
ATGGAGAGAAAAAAACTGCACGCAGTTAGCCCGATCTCTAGAGGAAAGAACAACTGCAAGCACGATGAGAGGAGATTGAAGACGACGTGGGAGGTGATAAGAGTAGATATGGCTGGGTCTTTTGGCTTGAGATATTTGTACACCCAACTGAAAGATTTCCCAATTGGATGCTTGAATTCATTGGACAATACCAAAAAATTGTCCGAGTTGGATCAACAAAATAAAGATCAAGAAGACAAGTTTCTCAACTATATCCAAGATTTATTTGATTCATGTGGGACCACCAACTTCGCATTCACAAATGGAACAAGCGTATTTGCTATTGTTAACTGTAGGTCGACGGACGAGAAAGATCATGACATTACTGTAGACGGGGCCTACAAGTATTTGAACTTCGATCGCATTTTGCCCAACATAGTTGGGACAAAATCTGGCAATGATTGGGCATGTAAACAAATGGAGAAAGCGATCTATAAGCTGGTTGAAGAATCTGGACGTATATCCATTGAAGAATCTGGACGTATATCCATTGAAGAACTAGCAAGATTCGCCTTCGACTTTTTAAAGACAAAGGCGAATGCTGAAGGCGTTGACGACGAGACAAAGGAAAAAATTTTAAGAGCGAGTGATTACCACAAATTGGGCGATGAAGAATGCATCACCTGGGCACAAATAGTGATGGCATATGCAACGTTTAAGGACCCTCACACCGGTGGCCCTGCACGCGGTGTTGATACAAAAGCGTGGGCCCAGCTGAGGTCACCAATGGGTTGGGCTCTAGGATCTTTGCTCACAGTTGGTTGGGTACATAAGCCTATATATAAGGTCTGTTATAAGTTGGAAATTGAAGAGTTTAGAAGAGAACCAGAGAGAAAGAAACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.81

Weight (kDa)

7.56

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 834
AccB7I CCANNNNNTGG 1 cut(s) 640
AccI GTMKAC 2 cut(s) 338, 369
AccII CGCG 1 cut(s) 726
AciI CCGC 1 cut(s) 726
AclI AACGTT 1 cut(s) 692
AclWI GGATC 2 cut(s) 219, 790
AcsI RAATTY 2 cut(s) 175, 612
AcuI CTGAAG 1 cut(s) 603
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 2 cut(s) 140, 807
AfiI CCNNNNNNNGG 4 cut(s) 640, 710, 725, 756
AgeI ACCGGT 1 cut(s) 710
AgsI TTSAA 7 cut(s) 79, 175, 391, 485, 509, 533, 848
AjiI CACGTC 1 cut(s) 87
AjnI CCWGG 1 cut(s) 662
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AleI CACNNNNGTG 1 cut(s) 711
AluBI AGCT 2 cut(s) 478, 754
AluI AGCT 2 cut(s) 478, 754
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 219, 790
AoxI GGCC 3 cut(s) 375, 715, 747
ApaI GGGCCC 1 cut(s) 751
ApoI RAATTY 2 cut(s) 175, 612
AsiGI ACCGGT 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 6 cut(s) 279, 375, 700, 716, 747, 748
AsuHPI GGTGA 3 cut(s) 106, 652, 753
AvaII GGWCC 2 cut(s) 279, 700
BaeGI GKGCMC 2 cut(s) 670, 751
BanII GRGCYC 2 cut(s) 751, 778
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BbsI GAAGAC 2 cut(s) 86, 240
BbvCI CCTCAGC 1 cut(s) 755
BccI CCATC 1 cut(s) 673
BciT130I CCWGG 1 cut(s) 664
BcoDI GTCTC 1 cut(s) 593
BfaI CTAG 3 cut(s) 39, 539, 779
BfmI CTRYAG 2 cut(s) 331, 366
Bme1390I CCNGG 1 cut(s) 664
Bme18I GGWCC 2 cut(s) 279, 700
BmgBI CACGTC 1 cut(s) 87
BmgT120I GGNCC 6 cut(s) 279, 375, 700, 716, 747, 748
BmiI GGNNCC 4 cut(s) 280, 376, 702, 749
BmrFI CCNGG 1 cut(s) 664
BmsI GCATC 2 cut(s) 158, 666
BpiI GAAGAC 2 cut(s) 86, 240
Bpu10I CCTNAGC 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 663
BsaWI WCCGGW 1 cut(s) 710
Bsc4I CCNNNNNNNGG 4 cut(s) 640, 710, 725, 756
Bse118I RCCGGY 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 664
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 4 cut(s) 640, 710, 725, 756
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 746
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 2 cut(s) 670, 751
BseYI CCCAGC 2 cut(s) 113, 750
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 3 cut(s) 377, 717, 749
BshTI ACCGGT 1 cut(s) 710
BsiEI CGRYCG 1 cut(s) 400
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 292, 436
BslI CCNNNNNNNGG 4 cut(s) 640, 710, 725, 756
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 2 cut(s) 292, 436
BsmI GAATGC 3 cut(s) 293, 583, 659
BsnI GGCC 3 cut(s) 377, 717, 749
Bsp120I GGGCCC 1 cut(s) 747
Bsp1286I GDGCHC 3 cut(s) 670, 751, 778
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
BspACI CCGC 1 cut(s) 726
BspANI GGCC 3 cut(s) 377, 717, 749
BspCNI CTCAG 1 cut(s) 747
BspFNI CGCG 1 cut(s) 726
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 4 cut(s) 280, 376, 702, 749
BspPI GGATC 2 cut(s) 219, 790
BsrDI GCAATG 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 710
BsrGI TGTACA 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
Bst2UI CCWGG 1 cut(s) 664
Bst4CI ACNGT 3 cut(s) 332, 367, 796
Bst6I CTCTTC 2 cut(s) 843, 853
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 3 cut(s) 21, 59, 724
BstDEI CTNAG 1 cut(s) 755
BstEII GGTNACC 1 cut(s) 759
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 726
BstKTI GATC 7 cut(s) 36, 214, 229, 355, 400, 471, 785
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 548, 723
BstNI CCWGG 1 cut(s) 664
BstNSI RCATGY 1 cut(s) 450
BstPI GGTNACC 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 662
BstSFI CTRYAG 2 cut(s) 331, 366
BstSLI GKGCMC 2 cut(s) 670, 751
BstUI CGCG 1 cut(s) 726
BstV2I GAAGAC 2 cut(s) 86, 240
BstX2I RGATCY 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 771
BstYI RGATCY 1 cut(s) 782
BsuRI GGCC 3 cut(s) 377, 717, 749
BtgZI GCGATG 1 cut(s) 660
BtrI CACGTC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 21, 59, 724
CciI TCATGA 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 6 cut(s) 279, 375, 700, 716, 747, 748
Csp6I GTAC 2 cut(s) 139, 806
CspAI ACCGGT 1 cut(s) 710
CviAII CATG 3 cut(s) 273, 356, 447
CviQI GTAC 2 cut(s) 139, 806
DdeI CTNAG 1 cut(s) 755
DpnI GATC 7 cut(s) 35, 213, 228, 354, 399, 470, 784
DpnII GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
DraI TTTAAA 1 cut(s) 564
DraIII CACNNNGTG 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 843, 853
EarI CTCTTC 2 cut(s) 843, 853
Eco24I GRGCYC 2 cut(s) 751, 778
Eco47I GGWCC 2 cut(s) 279, 700
Eco57I CTGAAG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 759
EcoO109I RGGNCCY 2 cut(s) 375, 700
EcoO65I GGTNACC 1 cut(s) 759
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 662
EcoT22I ATGCAT 1 cut(s) 659
EcoT38I GRGCYC 2 cut(s) 751, 778
FaeI CATG 3 cut(s) 276, 359, 450
FaqI GGGAC 2 cut(s) 292, 436
FatI CATG 3 cut(s) 272, 355, 446
FauNDI CATATG 1 cut(s) 685
FblI GTMKAC 2 cut(s) 338, 369
FokI GGATG 1 cut(s) 180
FriOI GRGCYC 2 cut(s) 751, 778
FspBI CTAG 3 cut(s) 39, 539, 779
GsaI CCCAGC 2 cut(s) 117, 754
HaeIII GGCC 3 cut(s) 377, 717, 749
HapII CCGG 1 cut(s) 711
Hin1II CATG 3 cut(s) 276, 359, 450
HincII GTYRAC 3 cut(s) 328, 339, 592
HindII GTYRAC 3 cut(s) 328, 339, 592
HinfI GANTC 4 cut(s) 269, 488, 512, 546
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 1 cut(s) 711
HphI GGTGA 3 cut(s) 106, 652, 753
Hpy166II GTNNAC 6 cut(s) 141, 328, 339, 370, 452, 592
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 5 cut(s) 39, 230, 356, 492, 516
Hpy8I GTNNAC 6 cut(s) 141, 328, 339, 370, 452, 592
Hpy99I CGWCG 3 cut(s) 88, 343, 599
HpyAV CCTTC 2 cut(s) 562, 578
HpyCH4III ACNGT 3 cut(s) 332, 367, 796
HpyCH4IV ACGT 4 cut(s) 86, 496, 520, 692
HpyCH4V TGCA 5 cut(s) 19, 57, 657, 689, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 723
HpyF3I CTNAG 1 cut(s) 755
HpySE526I ACGT 4 cut(s) 86, 496, 520, 692
Hsp92II CATG 3 cut(s) 276, 359, 450
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
LweI GCATC 2 cut(s) 158, 666
MaeI CTAG 3 cut(s) 39, 539, 779
MaeII ACGT 4 cut(s) 86, 496, 520, 692
MaeIII GTNAC 1 cut(s) 759
MalI GATC 7 cut(s) 35, 213, 228, 354, 399, 470, 784
MboI GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
MboII GAAGA 8 cut(s) 91, 245, 497, 521, 545, 662, 860, 870
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 3 cut(s) 670, 751, 778
MluCI AATT 6 cut(s) 162, 175, 197, 612, 638, 843
MmeI TCCRAC 2 cut(s) 189, 819
MnlI CCTC 5 cut(s) 35, 63, 85, 714, 750
Mph1103I ATGCAT 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 4 cut(s) 327, 563, 617, 696
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 1 cut(s) 664
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 3 cut(s) 293, 583, 659
MvaI CCWGG 1 cut(s) 664
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 2 cut(s) 548, 723
NdeI CATATG 1 cut(s) 685
NdeII GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
NlaIII CATG 3 cut(s) 276, 359, 450
NlaIV GGNNCC 4 cut(s) 280, 376, 702, 749
NmuCI GTSAC 1 cut(s) 759
NsiI ATGCAT 1 cut(s) 659
NspI RCATGY 1 cut(s) 450
OliI CACNNNNGTG 1 cut(s) 711
PagI TCATGA 1 cut(s) 355
PctI GAATGC 3 cut(s) 293, 583, 659
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 4 cut(s) 269, 488, 512, 546
PflMI CCANNNNNTGG 1 cut(s) 640
PinAI ACCGGT 1 cut(s) 710
Ple19I CGATCG 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 700
PsiI TTATAA 1 cut(s) 834
Psp1406I AACGTT 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 662
PspEI GGTNACC 1 cut(s) 759
PspFI CCCAGC 2 cut(s) 113, 750
PspGI CCWGG 1 cut(s) 662
PspN4I GGNNCC 4 cut(s) 280, 376, 702, 749
PspOMI GGGCCC 1 cut(s) 747
PspPI GGNCC 6 cut(s) 279, 375, 700, 716, 747, 748
PspPPI RGGWCCY 1 cut(s) 700
PsuI RGATCY 1 cut(s) 782
PvuI CGATCG 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 754
RsaI GTAC 2 cut(s) 140, 807
RsaNI GTAC 2 cut(s) 139, 806
RseI CAYNNNNRTG 1 cut(s) 711
SalI GTCGAC 1 cut(s) 337
SaqAI TTAA 4 cut(s) 327, 563, 617, 696
Sau3AI GATC 7 cut(s) 33, 211, 226, 352, 397, 468, 782
Sau96I GGNCC 6 cut(s) 279, 375, 700, 716, 747, 748
ScrFI CCNGG 1 cut(s) 664
SduI GDGCHC 3 cut(s) 670, 751, 778
SfaNI GCATC 2 cut(s) 158, 666
SfcI CTRYAG 2 cut(s) 331, 366
SgrAI CRCCGGYG 1 cut(s) 710
SinI GGWCC 2 cut(s) 279, 700
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 6 cut(s) 162, 175, 197, 612, 638, 843
SsiI CCGC 1 cut(s) 726
SspMI CTAG 3 cut(s) 39, 539, 779
StyD4I CCNGG 1 cut(s) 662
TaaI ACNGT 3 cut(s) 332, 367, 796
TaiI ACGT 4 cut(s) 89, 499, 523, 695
TaqI TCGA 3 cut(s) 338, 396, 555
TasI AATT 6 cut(s) 162, 175, 197, 612, 638, 843
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 4 cut(s) 269, 488, 512, 546
Tru1I TTAA 4 cut(s) 327, 563, 617, 696
Tru9I TTAA 4 cut(s) 327, 563, 617, 696
TseFI GTSAC 1 cut(s) 759
Tsp45I GTSAC 1 cut(s) 759
TspDTI ATGAA 3 cut(s) 168, 261, 663
TspGWI ACGGA 1 cut(s) 356
Van91I CCANNNNNTGG 1 cut(s) 640
VpaK11BI GGWCC 2 cut(s) 279, 700
XapI RAATTY 2 cut(s) 175, 612
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 1 cut(s) 450
XmiI GTMKAC 2 cut(s) 338, 369
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 3 cut(s) 39, 539, 779
Zsp2I ATGCAT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.