Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016455

Physical Location & Seq

Genomic Coordinates Forward (+)

62261041 .. 62264180

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG368800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATTTTTTTTTTTTTCATGTGTGGGTCATGCAGGAACAAGATACGTACTGGTGTAGCTCTGCATTTGAAGAGGCTTGTTACAGAAACTATTTTCCTTGAATTTTTCAAGAACCTTTGGGCAGGAAGGAATCCATCCCATTCCTTGAACGCGGATAGACTAGCATTTTTTCGGGAGTTTAAAGACTGCTTTCTTTGGGCAATATTGCATAAAGTTTCAAGATGTTGCAATGGAGTGGATTCCATGAGTGATTTTCGAGCAACTCTTTTTAAAAAGGTTCCGGTAAAGCTTCTGTGGCAAGAGTACATTTTCTCCAGTAGCTCAAGAAATAAGGAGAAAACATCTCCAGGGGTATCAGCAGACACATGTGAAACATCGAATATTACGTACCCAAAGATCTACTTTGGAGAGTTGGTAAACTGTATCGTTGGGGTTATTTCAGGCATTTATTTGCTGGAGCATGATTTGCTCTCAGCTTTCTCTGCAGAATGTCAGGAGAACTGTCAAGACTTTCTTTCAGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

175

Amino Acids

20.03

Weight (kDa)

8.33

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016455)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0061981
rosa_laevigata	RLG00000035524
rosa_multiflora	Rmu_sc0000680.1_g000045 Rmu_sc0002296.1_g000002
rosa_roxburghii	Rroxscaffold_1G00018730 Rroxscaffold_1G00018740
rosa_samantha	Rh5AG368800 Rh5AG406400 Rh5AG406500 Rh5BG420000 Rh5CG402600 Rh5CG444100 Rh5DG435300 Rh6BG228800
rosa_wichuraiana	Rw5G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	3 cut(s)	49, 305, 389
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	70, 101, 109, 148, 219
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	4 cut(s)	59, 289, 321, 476
AluI	AGCT	4 cut(s)	59, 289, 321, 476
ApoI	RAATTY	1 cut(s)	101
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	348
BfaI	CTAG	2 cut(s)	161, 526
BfmI	CTRYAG	1 cut(s)	483
BglII	AGATCT	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	348
BpmI	CTGGAG	3 cut(s)	298, 330, 476
BpuEI	CTTGAG	1 cut(s)	307
BsaAI	YACGTR	2 cut(s)	47, 387
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 399, 429
Bse1I	ACTGG	2 cut(s)	55, 315
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	55, 315
Bsh1236I	CGCG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	55, 315
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	422, 503
Bst6I	CTCTTC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstBAI	YACGTR	2 cut(s)	47, 387
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 466, 482
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	2 cut(s)	369, 525
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	483
BstSNI	TACGTA	2 cut(s)	47, 387
BstUI	CGCG	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	523
Csp6I	GTAC	3 cut(s)	48, 304, 388
CviAII	CATG	6 cut(s)	19, 30, 244, 366, 461, 522
CviJI	RGCY	5 cut(s)	59, 76, 289, 321, 476
CviKI_1	RGCY	5 cut(s)	59, 76, 289, 321, 476
CviQI	GTAC	3 cut(s)	48, 304, 388
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
DraI	TTTAAA	2 cut(s)	181, 271
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco105I	TACGTA	2 cut(s)	47, 387
EcoRII	CCWGG	1 cut(s)	346
FaeI	CATG	6 cut(s)	22, 33, 247, 369, 464, 525
FaiI	YATR	7 cut(s)	20, 31, 210, 245, 367, 462, 523
FalI	AAGNNNNNCTT	3 cut(s)	386, 418, 498
FatI	CATG	6 cut(s)	18, 29, 243, 365, 460, 521
FokI	GGATG	1 cut(s)	121
FspBI	CTAG	2 cut(s)	161, 526
GsuI	CTGGAG	3 cut(s)	298, 330, 476
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	6 cut(s)	22, 33, 247, 369, 464, 525
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	130, 239
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188III	TCNNGA	6 cut(s)	109, 173, 219, 324, 494, 506
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	422, 503
HpyCH4IV	ACGT	2 cut(s)	46, 386
HpyCH4V	TGCA	5 cut(s)	33, 64, 208, 228, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 466, 482
HpyF3I	CTNAG	1 cut(s)	472
HpySE526I	ACGT	2 cut(s)	46, 386
Hsp92II	CATG	6 cut(s)	22, 33, 247, 369, 464, 525
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	161, 526
MaeII	ACGT	2 cut(s)	46, 386
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	1 cut(s)	396
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	180, 270
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	295, 466, 482
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	6 cut(s)	22, 33, 247, 369, 464, 525
NlaIV	GGNNCC	1 cut(s)	279
NspI	RCATGY	2 cut(s)	369, 525
PaeI	GCATGC	1 cut(s)	525
PciI	ACATGT	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	130, 239
Ppu21I	YACGTR	2 cut(s)	47, 387
PscI	ACATGT	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	3 cut(s)	49, 305, 389
RsaNI	GTAC	3 cut(s)	48, 304, 388
SaqAI	TTAA	2 cut(s)	180, 270
Sau3AI	GATC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	348
SetI	ASST	8 cut(s)	49, 61, 117, 279, 291, 323, 389, 478
SfcI	CTRYAG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SnaBI	TACGTA	2 cut(s)	47, 387
SphI	GCATGC	1 cut(s)	525
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	2 cut(s)	204, 382
SspMI	CTAG	2 cut(s)	161, 526
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	422, 503
TaiI	ACGT	2 cut(s)	49, 389
TaqI	TCGA	2 cut(s)	256, 377
TasI	AATT	1 cut(s)	101
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	130, 239
Tru1I	TTAA	2 cut(s)	180, 270
Tru9I	TTAA	2 cut(s)	180, 270
TspDTI	ATGAA	1 cut(s)	7
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	2 cut(s)	369, 525
XspI	CTAG	2 cut(s)	161, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.