Rh5AG406500

Belongs to the RuvB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016455
Physical Location & Seq
Reverse (-)
70309792 .. 70312608
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG406500.1

Sequence Viewer

Length: 519 bp
ATGGAAAAGGTTGCTGTTGGTGATATTATATACATTGAAGCAAACAGTGGGGCAGTAAAAAGGGTAGGCAGAGTTGATGCATTTACTGCAGAATTCGATCTTGAAGCAGAAGAGTATGTTCCACTTCCAAAAGGAGAGGTTCACAAAGAGGAGATTGTGCAGGATGTAACTCTGCACGATCTAGATGCGAATGCACGACCTCAAGCGGGGCTAGACATATTATCTCTAATGGGTCCAATGATGAAGCCAAGAAAAACAGAAACTATGGGCAAATTGCGACAAGAAATAAACAAGGTCATGCAGGAACAAGATACTGGTGTTGCTCTGCATTTGAAGAGGCTTGTAAAAGAAACTTTTTTCCTTGAATTTTTCAAGAACCTTTGGGCAGGAAGGAATCCATCCCATTCCTTGAATGTAGATAGACTAGCATTTTTCCGGGCGTTTAAAGACTGCTTTCCTTGGGCATTGCATAATGTTTCAAGGTATTGCAATGGAGTGGATTCCATCACTGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
TIP49

Protein Analysis

172

Amino Acids

19.59

Weight (kDa)

5.75

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP49 PF06068 2 - 105 7.5e-28 TIP49 P-loop domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AcsI RAATTY 2 cut(s) 92, 365
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 7 cut(s) 38, 104, 334, 365, 373, 412, 480
ApoI RAATTY 2 cut(s) 92, 365
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BccI CCATC 2 cut(s) 406, 512
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcnI CCSGG 1 cut(s) 437
BfaI CTAG 3 cut(s) 182, 212, 425
BfmI CTRYAG 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 437
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 437
BmsI GCATC 2 cut(s) 67, 175
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 458
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 2 cut(s) 464, 496
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 2 cut(s) 169, 398
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 2 cut(s) 464, 496
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 164
BsgI GTGCAG 2 cut(s) 158, 179
BsiSI CCGG 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 206
BsmI GAATGC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 97, 178
BspACI CCGC 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 91
BsrDI GCAATG 2 cut(s) 464, 496
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 2 cut(s) 97, 178
BssT1I CCWWGG 1 cut(s) 458
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 2 cut(s) 105, 329
BstAPI GCANNNNNTGC 1 cut(s) 86
BstF5I GGATG 2 cut(s) 169, 398
BstKTI GATC 2 cut(s) 100, 181
BstMBI GATC 2 cut(s) 97, 178
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 169, 398
BtsIMutI CAGTG 2 cut(s) 52, 507
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 1 cut(s) 298
CviJI RGCY 3 cut(s) 211, 247, 340
CviKI_1 RGCY 3 cut(s) 211, 247, 340
DpnI GATC 2 cut(s) 99, 180
DpnII GATC 2 cut(s) 97, 178
DraI TTTAAA 1 cut(s) 445
Eam1104I CTCTTC 2 cut(s) 105, 329
EarI CTCTTC 2 cut(s) 105, 329
Eco130I CCWWGG 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 1 cut(s) 301
FaiI YATR 7 cut(s) 29, 31, 117, 218, 266, 299, 471
FatI CATG 1 cut(s) 297
FauI CCCGC 1 cut(s) 199
FokI GGATG 2 cut(s) 176, 385
FspBI CTAG 3 cut(s) 182, 212, 425
HapII CCGG 1 cut(s) 436
Hin1II CATG 1 cut(s) 301
HinfI GANTC 2 cut(s) 394, 500
HpaII CCGG 1 cut(s) 436
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 101, 182, 373
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 9 cut(s) 80, 89, 160, 175, 194, 301, 328, 469, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 97, 178
LpnPI CCDG 5 cut(s) 146, 287, 300, 372, 449
LweI GCATC 2 cut(s) 67, 175
MaeI CTAG 3 cut(s) 182, 212, 425
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 99, 180
MboI GATC 2 cut(s) 97, 178
MboII GAAGA 2 cut(s) 122, 346
MluCI AATT 3 cut(s) 92, 272, 365
MnlI CCTC 4 cut(s) 130, 142, 210, 330
Mph1103I ATGCAT 1 cut(s) 82
MseI TTAA 1 cut(s) 444
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 437
Mva1269I GAATGC 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 437
NdeII GATC 2 cut(s) 97, 178
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 82
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 394, 500
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 444
Sau3AI GATC 2 cut(s) 97, 178
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 437
SetI ASST 6 cut(s) 12, 141, 202, 297, 381, 485
SfaNI GCATC 2 cut(s) 67, 175
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 3 cut(s) 92, 272, 365
SsiI CCGC 1 cut(s) 206
SspMI CTAG 3 cut(s) 182, 212, 425
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 92, 272, 365
TfiI GAWTC 2 cut(s) 394, 500
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 52, 514
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 2 cut(s) 52, 514
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 2 cut(s) 92, 365
XbaI TCTAGA 1 cut(s) 181
XspI CTAG 3 cut(s) 182, 212, 425
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.