Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016455

Physical Location & Seq

Genomic Coordinates Forward (+)

43235758 .. 43236760

Gene Structure 1003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG228800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTCTGTTTATTATCTATTGCGGGCAAACTTTGTAAAGGATGTTTGACTTATAGTTGTCATGTTGAAGAAATTGTCTTTCGGATTTTTGTTCTTTTCATACAATTTTTCTCATACAACATGCAGGTGGCTGTTGGTGATGTCATATACATTGAGGCAAATAGTGGAGCAGTAAAAAGGGTTGGTAGAAGTGATGCTTTTGCCACCGAATTTGATCTGGAAGCAGAAGAGTATGTTCCACTTCCAAAAGGAGAGATTCACAAAAAGAAGGAGATTGTACAGGACGTAACACTGCATGATCTGGAAGCTGCAAATGCACGACCTCAAGGTGGCCAAGACATATTATCTCTAATGGGTCAGATGATGAAACCAAGGAAAACAGAAATGACTGACAAATTGCGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000491 GO:0000492 GO:0000785 GO:0000790 GO:0000812 GO:0002682 GO:0002831 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009888 GO:0009889 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0010755 GO:0010756 GO:0010941 GO:0010954 GO:0016043 GO:0016363 GO:0016462 GO:0016569 GO:0016570 GO:0016573 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0030162 GO:0031011 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032270 GO:0032392 GO:0032502 GO:0032508 GO:0032991 GO:0033202 GO:0034399 GO:0034622 GO:0034708 GO:0035097 GO:0035267 GO:0036211 GO:0042623 GO:0042981 GO:0043067 GO:0043138 GO:0043140 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043900 GO:0043933 GO:0043967 GO:0043968 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0045088 GO:0045862 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048856 GO:0050776 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070035 GO:0070603 GO:0070613 GO:0071103 GO:0071339 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097255 GO:0097346 GO:0140097 GO:1900150 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1903317 GO:1903319 GO:1903506 GO:1904949 GO:1990234 GO:2000072 GO:2000112 GO:2000269 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

TIP49

Protein Analysis

135

Amino Acids

15.25

Weight (kDa)

5.91

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	41 - 135	8.6e-32	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016455)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0061981
rosa_laevigata	RLG00000035524
rosa_multiflora	Rmu_sc0000680.1_g000045 Rmu_sc0002296.1_g000002
rosa_roxburghii	Rroxscaffold_1G00018730 Rroxscaffold_1G00018740
rosa_samantha	Rh5AG368800 Rh5AG406400 Rh5AG406500 Rh5BG420000 Rh5CG402600 Rh5CG444100 Rh5DG435300 Rh6BG228800
rosa_wichuraiana	Rw5G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	115
Acc36I	ACCTGC	1 cut(s)	115
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	295
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmsI	GCATC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	329
BsnI	GGCC	1 cut(s)	333
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	214, 298
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	333
BspMI	ACCTGC	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	2 cut(s)	214, 298
BssT1I	CCWWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	217, 301
BstMBI	GATC	2 cut(s)	214, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	3 cut(s)	62, 121, 296
CviJI	RGCY	3 cut(s)	131, 308, 333
CviKI_1	RGCY	3 cut(s)	131, 308, 333
CviQI	GTAC	1 cut(s)	278
DpnI	GATC	2 cut(s)	216, 300
DpnII	GATC	2 cut(s)	214, 298
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	3 cut(s)	65, 124, 299
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	3 cut(s)	61, 120, 295
FauI	CCCGC	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	65, 124, 299
HinfI	GANTC	1 cut(s)	256
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	84, 360
Hpy188III	TCNNGA	2 cut(s)	218, 302
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	124, 295, 311, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	65, 124, 299
Kzo9I	GATC	2 cut(s)	214, 298
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	4 cut(s)	110, 203, 266, 287
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	216, 300
MboI	GATC	2 cut(s)	214, 298
MboII	GAAGA	2 cut(s)	80, 239
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	4 cut(s)	72, 104, 209, 395
MluNI	TGGCCA	1 cut(s)	333
MnlI	CCTC	2 cut(s)	148, 333
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	2 cut(s)	214, 298
NlaIII	CATG	3 cut(s)	65, 124, 299
NspI	RCATGY	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	214, 298
SetI	ASST	5 cut(s)	129, 288, 310, 325, 331
SfaNI	GCATC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	4 cut(s)	72, 104, 209, 395
SsiI	CCGC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	288
TasI	AATT	4 cut(s)	72, 104, 209, 395
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	88, 380
TspRI	CASTG	1 cut(s)	297
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.