Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0016455

Physical Location & Seq

Genomic Coordinates Reverse (-)

67575070 .. 67579546

Gene Structure 4477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCAGAATTTCTTTCAGCATGCTAGTAACATGGAAAGAGAAAGTGAGTATGCCGAGCTAGTTATTCAGTTTATATTGTTACTTGGAGAACAAGCAATGCAGAATGGTGAAAGTTGGCCTTTGGCTTCTGGAGTTGGACCAATGGTGGAAGATACATTCCTGCATATGTTCAAAGCAAGTTTTGTTCGATGGTGTCTCAGTGGGAGTAGTTGCTCCATAAATGCTTGTCTTGACCTGTTACTTGCATTGCTTGACGATGAATATTTCTCCGAGCAGCGAGATAGTGTTATCAGATATGATACTAACCTGGAGCGTTCTGGATATGCACCCTGTTTTTTAGATTCTGACCGGATATTATATTCCATCACATTGACATCTTTGAGCTGCTTATGTAAGCTTGAAGTTCTGGACTGTCACTCTCAGGATCCCTATGAGAAACAAAATCTGCTAGACCAACTTCTTTGTGAAGGTGATGGACGGCCTTTGCCAGTTCTGGATTTCAGCAGGCCAGAGGGATTAGTTGCCAGGGACATATCTGCTGACCATAATTCCAGATTATTGTTGTCCTGGATTATTGCGATTACAGGGGTCTTTTGGCTTGAGATATTTGTACACCCAACTGAAAGATTTCACAATTGGATGCTTGAATTCATTAGACAGTGCCAAAAAATTGTCCGAGTTGGATCAAGAAGACAAGTTTCTCAACGTACTGTATCCAAGTGGAAAAGAGTTATGGAGACCACCTTCAAGAAGAAATCGATGAAGTCCGTGATGAGTGGGCAGAATTTGTTAGTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

266

Amino Acids

30.65

Weight (kDa)

5.57

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016455)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0061981
rosa_laevigata	RLG00000035524
rosa_multiflora	Rmu_sc0000680.1_g000045 Rmu_sc0002296.1_g000002
rosa_roxburghii	Rroxscaffold_1G00018730 Rroxscaffold_1G00018740
rosa_samantha	Rh5AG368800 Rh5AG406400 Rh5AG406500 Rh5BG420000 Rh5CG402600 Rh5CG444100 Rh5DG435300 Rh6BG228800
rosa_wichuraiana	Rw5G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	419, 432, 691
AcsI	RAATTY	3 cut(s)	7, 647, 784
AfaI	GTAC	2 cut(s)	612, 709
AgsI	TTSAA	4 cut(s)	172, 401, 647, 748
AjnI	CCWGG	3 cut(s)	306, 524, 566
AluBI	AGCT	3 cut(s)	58, 384, 397
AluI	AGCT	3 cut(s)	58, 384, 397
Alw26I	GTCTC	2 cut(s)	200, 731
AlwI	GGATC	3 cut(s)	419, 432, 691
AoxI	GGCC	3 cut(s)	116, 479, 506
ApeKI	GCWGC	2 cut(s)	274, 384
ApoI	RAATTY	3 cut(s)	7, 647, 784
Asp700I	GAANNNNTTC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	119, 482
AvaII	GGWCC	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	697
BbvI	GCAGC	2 cut(s)	286, 371
BccI	CCATC	3 cut(s)	183, 371, 467
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	3 cut(s)	308, 526, 568
BciVI	GTATCC	1 cut(s)	724
BcoDI	GTCTC	2 cut(s)	200, 731
BfaI	CTAG	3 cut(s)	24, 59, 449
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	2 cut(s)	275, 385
BlsI	GCNGC	2 cut(s)	276, 386
Bme1390I	CCNGG	3 cut(s)	308, 526, 568
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	3 cut(s)	308, 526, 568
BmsI	GCATC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	697
BpmI	CTGGAG	2 cut(s)	150, 329
BpuEI	CTTGAG	1 cut(s)	620
Bsa29I	ATCGAT	1 cut(s)	758
BsaI	GGTCTC	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	2 cut(s)	102, 245
BseBI	CCWGG	3 cut(s)	308, 526, 568
BseCI	ATCGAT	1 cut(s)	758
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	645
BseMI	GCAATG	2 cut(s)	102, 245
BseMII	CTCAG	2 cut(s)	211, 434
BseNI	ACTGG	1 cut(s)	488
BseXI	GCAGC	2 cut(s)	286, 371
BshFI	GGCC	3 cut(s)	118, 481, 508
BshVI	ATCGAT	1 cut(s)	758
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	542
BsmAI	GTCTC	2 cut(s)	200, 731
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	118, 481, 508
Bso31I	GGTCTC	1 cut(s)	731
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	2 cut(s)	424, 683
BspANI	GGCC	3 cut(s)	118, 481, 508
BspCNI	CTCAG	2 cut(s)	210, 433
BspDI	ATCGAT	1 cut(s)	758
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	3 cut(s)	419, 432, 691
BspTNI	GGTCTC	1 cut(s)	731
BsrDI	GCAATG	2 cut(s)	102, 245
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	2 cut(s)	424, 683
Bst2UI	CCWGG	3 cut(s)	308, 526, 568
Bst4CI	ACNGT	3 cut(s)	413, 660, 712
BstAUI	TGTACA	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	21, 506
BstDEI	CTNAG	2 cut(s)	197, 420
BstF5I	GGATG	1 cut(s)	645
BstKTI	GATC	2 cut(s)	427, 686
BstMAI	GTCTC	2 cut(s)	200, 731
BstMBI	GATC	2 cut(s)	424, 683
BstNI	CCWGG	3 cut(s)	308, 526, 568
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	3 cut(s)	306, 524, 566
BstV1I	GCAGC	2 cut(s)	286, 371
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	758
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	3 cut(s)	118, 481, 508
BsuTUI	ATCGAT	1 cut(s)	758
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	205, 665
Cac8I	GCNNGC	2 cut(s)	21, 506
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	611, 708
CviAII	CATG	2 cut(s)	20, 31
CviJI	RGCY	8 cut(s)	58, 118, 125, 384, 397, 481, 508, 598
CviKI_1	RGCY	8 cut(s)	58, 118, 125, 384, 397, 481, 508, 598
CviQI	GTAC	2 cut(s)	611, 708
DdeI	CTNAG	2 cut(s)	197, 420
DpnI	GATC	2 cut(s)	426, 685
DpnII	GATC	2 cut(s)	424, 683
Eco31I	GGTCTC	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	3 cut(s)	306, 524, 566
FaeI	CATG	2 cut(s)	23, 34
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	2 cut(s)	19, 30
FauNDI	CATATG	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	275, 385
FokI	GGATG	1 cut(s)	652
Fsp4HI	GCNGC	2 cut(s)	275, 385
FspBI	CTAG	3 cut(s)	24, 59, 449
GluI	GCNGC	2 cut(s)	275, 385
GsuI	CTGGAG	2 cut(s)	150, 329
HaeIII	GGCC	3 cut(s)	118, 481, 508
HapII	CCGG	1 cut(s)	349
Hin1II	CATG	2 cut(s)	23, 34
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	119, 482
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	4 cut(s)	271, 293, 346, 677
Hpy188III	TCNNGA	9 cut(s)	129, 230, 318, 407, 422, 494, 552, 687, 748
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	2 cut(s)	461, 754
HpyCH4III	ACNGT	3 cut(s)	413, 660, 712
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	4, 100, 163, 245, 326
HpyF3I	CTNAG	2 cut(s)	197, 420
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	2 cut(s)	23, 34
Kzo9I	GATC	2 cut(s)	424, 683
LmnI	GCTCC	2 cut(s)	218, 310
Lsp1109I	GCAGC	2 cut(s)	286, 371
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	3 cut(s)	24, 59, 449
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	4 cut(s)	26, 78, 237, 413
MalI	GATC	2 cut(s)	426, 685
MboI	GATC	2 cut(s)	424, 683
MboII	GAAGA	3 cut(s)	161, 702, 763
MfeI	CAATTG	1 cut(s)	634
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	6 cut(s)	7, 547, 634, 647, 669, 784
MmeI	TCCRAC	2 cut(s)	115, 661
MnlI	CCTC	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	627
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	3 cut(s)	308, 526, 568
MunI	CAATTG	1 cut(s)	634
MvaI	CCWGG	3 cut(s)	308, 526, 568
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	2 cut(s)	424, 683
NlaIII	CATG	2 cut(s)	23, 34
NlaIV	GGNNCC	1 cut(s)	426
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	276, 386
Psp6I	CCWGG	3 cut(s)	306, 524, 566
PspGI	CCWGG	3 cut(s)	306, 524, 566
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	612, 709
RsaNI	GTAC	2 cut(s)	611, 708
SatI	GCNGC	2 cut(s)	275, 385
Sau3AI	GATC	2 cut(s)	424, 683
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	308, 526, 568
SetI	ASST	8 cut(s)	60, 237, 309, 386, 399, 472, 709, 746
SfaNI	GCATC	1 cut(s)	630
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	6 cut(s)	7, 547, 634, 647, 669, 784
SspI	AATATT	1 cut(s)	263
SspMI	CTAG	3 cut(s)	24, 59, 449
StyD4I	CCNGG	3 cut(s)	306, 524, 566
TaaI	ACNGT	3 cut(s)	413, 660, 712
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	187, 758
TasI	AATT	6 cut(s)	7, 547, 634, 647, 669, 784
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	1 cut(s)	341
TscAI	CASTG	2 cut(s)	205, 665
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	2 cut(s)	274, 384
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	273, 640, 776
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	2 cut(s)	205, 665
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	3 cut(s)	7, 647, 784
XceI	RCATGY	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	3 cut(s)	24, 59, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.