Rh5CG402600

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016455
Physical Location & Seq
Reverse (-)
53597474 .. 53609174
11701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG402600.1

Sequence Viewer

Length: 825 bp
ATGACGGGTTACTTTTTACTGTTAACGGCTGTTTGTGTGTTTTTTTGGTATATCACAACAAATGAGTGGACCAGAATGCGCCACCTCAACAAAGGGGTAAAATTGTCCCAAGCTGTAACTTACAGCCGTTGCATTCCGGCCTCCTCAGCAGACACATGTGAAAATGATTTAGCTTCCAACACAGTTGAAACATCGAATATTACGTACCCAAAGATCTACTTTGGAGAGTTGGTAAACTGCATCGTTGGGGTTATTTCAGGCATTTATTTGCTGGAGCATGATTTGCTCTCAGCTTTCTCTGCAGAATGTCAGGAGAACTGTCAGACTTTCTTTCAGCATGCTAGTAACATGGAAAGAGAAAGCGAGTACGCTGAGCTAGTTATTCAGTTTATATCATTACTTGGAGAACTTGCAATGCAGAATGGTGGAAGTTGGCCATTGGCTTCTGTAGTTGGACCAAAGCTGGCCAATTCCTTTGCATCAATGGGATCACATGATTTAGACGATGAATGTGGTACTACCAACCTGGCGTATAGCAATGGTGTTTGCACATTTGTTTATGTTGATTCTAGGTGGACATCTGAGAAAGATCCTGTACAATTCCGTCAAATGAGCAAGGAAGGGATAATTGAGATATCTAAGGATCCGCTTAGAACTTACTTGGAGCATTATGAGCAATTTAAGACTCTGGACAACCGGGTCCACATGCAGCAGGAGGGTAAAGGGCATGATGATCCCAAGCCGTACAGAGACTCAACGGTTTTCATTTTGAGACATTCTTATAAGAATATCTCACATGAAGAGATGATGGAATTTATCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

274

Amino Acids

31.27

Weight (kDa)

5.1

Isoelectric Point (pI)

28.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AasI GACNNNNNNGTC 1 cut(s) 698
AciI CCGC 1 cut(s) 647
AclWI GGATC 5 cut(s) 496, 584, 638, 651, 728
AcoI YGGCCR 2 cut(s) 434, 465
AcsI RAATTY 1 cut(s) 812
AfaI GTAC 5 cut(s) 206, 368, 517, 597, 746
AflIII ACRYGT 1 cut(s) 155
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 5 cut(s) 113, 173, 293, 376, 463
AluI AGCT 5 cut(s) 113, 173, 293, 376, 463
Alw26I GTCTC 2 cut(s) 744, 766
AlwI GGATC 5 cut(s) 496, 584, 638, 651, 728
AoxI GGCC 3 cut(s) 138, 434, 465
ApeKI GCWGC 1 cut(s) 709
ApoI RAATTY 1 cut(s) 812
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 3 cut(s) 69, 455, 700
AsuC2I CCSGG 1 cut(s) 698
AvaII GGWCC 3 cut(s) 69, 455, 700
BalI TGGCCA 2 cut(s) 436, 467
BamHI GGATCC 1 cut(s) 643
BbvCI CCTCAGC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 721
BccI CCATC 1 cut(s) 802
BceAI ACGGC 3 cut(s) 42, 111, 727
BciT130I CCWGG 1 cut(s) 527
BcnI CCSGG 1 cut(s) 698
BcoDI GTCTC 2 cut(s) 744, 766
BfaI CTAG 3 cut(s) 342, 377, 570
BfmI CTRYAG 2 cut(s) 300, 447
BglII AGATCT 1 cut(s) 213
BisI GCNGC 1 cut(s) 710
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 711
Bme1390I CCNGG 2 cut(s) 527, 698
Bme18I GGWCC 3 cut(s) 69, 455, 700
BmgT120I GGNCC 3 cut(s) 69, 455, 700
BmiI GGNNCC 2 cut(s) 645, 701
BmrFI CCNGG 2 cut(s) 527, 698
BmsI GCATC 2 cut(s) 249, 488
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 698
BsaAI YACGTR 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bse3DI GCAATG 2 cut(s) 420, 544
BseBI CCWGG 1 cut(s) 527
BseMI GCAATG 2 cut(s) 420, 544
BseMII CTCAG 4 cut(s) 159, 303, 363, 573
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 721
BshFI GGCC 3 cut(s) 140, 436, 467
BsiSI CCGG 2 cut(s) 137, 697
BslFI GGGAC 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 744, 766
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 2 cut(s) 81, 132
BsnI GGCC 3 cut(s) 140, 436, 467
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 5 cut(s) 213, 488, 589, 643, 733
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 1 cut(s) 647
BspANI GGCC 3 cut(s) 140, 436, 467
BspCNI CTCAG 4 cut(s) 158, 302, 364, 574
BspLI GGNNCC 2 cut(s) 645, 701
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 5 cut(s) 496, 584, 638, 651, 728
BsrDI GCAATG 2 cut(s) 420, 544
BsrGI TGTACA 1 cut(s) 595
BssMI GATC 5 cut(s) 213, 488, 589, 643, 733
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 4 cut(s) 21, 184, 320, 760
Bst6I CTCTTC 1 cut(s) 795
BstAPI GCANNNNNTGC 1 cut(s) 283
BstAUI TGTACA 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 339, 465
BstDEI CTNAG 6 cut(s) 145, 289, 372, 582, 639, 650
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 5 cut(s) 216, 491, 592, 646, 736
BstMAI GTCTC 2 cut(s) 744, 766
BstMBI GATC 5 cut(s) 213, 488, 589, 643, 733
BstMWI GCNNNNNNNGC 4 cut(s) 146, 283, 299, 673
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 3 cut(s) 159, 341, 709
BstSCI CCNGG 2 cut(s) 525, 696
BstSFI CTRYAG 2 cut(s) 300, 447
BstSNI TACGTA 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 721
BstX2I RGATCY 3 cut(s) 213, 589, 643
BstYI RGATCY 3 cut(s) 213, 589, 643
BsuRI GGCC 3 cut(s) 140, 436, 467
Cac8I GCNNGC 2 cut(s) 339, 465
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 3 cut(s) 69, 455, 700
Csp6I GTAC 5 cut(s) 205, 367, 516, 596, 745
CviAII CATG 8 cut(s) 156, 278, 338, 349, 494, 706, 728, 797
CviQI GTAC 5 cut(s) 205, 367, 516, 596, 745
DdeI CTNAG 6 cut(s) 145, 289, 372, 582, 639, 650
DpnI GATC 5 cut(s) 215, 490, 591, 645, 735
DpnII GATC 5 cut(s) 213, 488, 589, 643, 733
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 2 cut(s) 434, 465
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco105I TACGTA 1 cut(s) 204
Eco32I GATATC 1 cut(s) 636
Eco47I GGWCC 3 cut(s) 69, 455, 700
EcoRII CCWGG 1 cut(s) 525
EcoRV GATATC 1 cut(s) 636
FaeI CATG 8 cut(s) 159, 281, 341, 352, 497, 709, 731, 800
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 91
FatI CATG 8 cut(s) 155, 277, 337, 348, 493, 705, 727, 796
Fnu4HI GCNGC 1 cut(s) 710
Fsp4HI GCNGC 1 cut(s) 710
FspBI CTAG 3 cut(s) 342, 377, 570
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 710
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 3 cut(s) 140, 436, 467
HapII CCGG 2 cut(s) 137, 697
HhaI GCGC 1 cut(s) 81
Hin1II CATG 8 cut(s) 159, 281, 341, 352, 497, 709, 731, 800
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 3 cut(s) 566, 685, 752
HpaI GTTAAC 1 cut(s) 24
HpaII CCGG 2 cut(s) 137, 697
Hpy166II GTNNAC 5 cut(s) 24, 69, 235, 576, 703
Hpy188I TCNGA 2 cut(s) 324, 583
Hpy188III TCNNGA 2 cut(s) 311, 689
Hpy8I GTNNAC 5 cut(s) 24, 69, 235, 576, 703
HpyAV CCTTC 1 cut(s) 614
HpyCH4III ACNGT 4 cut(s) 21, 184, 320, 760
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 8 cut(s) 132, 240, 302, 413, 418, 479, 549, 709
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 283, 299, 673
HpyF3I CTNAG 6 cut(s) 145, 289, 372, 582, 639, 650
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 8 cut(s) 159, 281, 341, 352, 497, 709, 731, 800
HspAI GCGC 1 cut(s) 79
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 5 cut(s) 213, 488, 589, 643, 733
LmnI GCTCC 2 cut(s) 274, 664
Lsp1109I GCAGC 1 cut(s) 721
LweI GCATC 2 cut(s) 249, 488
MaeI CTAG 3 cut(s) 342, 377, 570
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 3 cut(s) 8, 115, 344
MalI GATC 5 cut(s) 215, 490, 591, 645, 735
MboI GATC 5 cut(s) 213, 488, 589, 643, 733
MboII GAAGA 1 cut(s) 812
MflI RGATCY 3 cut(s) 213, 589, 643
MlsI TGGCCA 2 cut(s) 436, 467
MluCI AATT 6 cut(s) 101, 469, 599, 627, 677, 812
MluNI TGGCCA 2 cut(s) 436, 467
MlyI GAGTC 2 cut(s) 679, 746
MmeI TCCRAC 2 cut(s) 201, 433
MnlI CCTC 4 cut(s) 95, 151, 154, 709
Mox20I TGGCCA 2 cut(s) 436, 467
MscI TGGCCA 2 cut(s) 436, 467
MseI TTAA 2 cut(s) 23, 681
Msp20I TGGCCA 2 cut(s) 436, 467
MspI CCGG 2 cut(s) 137, 697
MspR9I CCNGG 2 cut(s) 527, 698
Mva1269I GAATGC 2 cut(s) 81, 132
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 4 cut(s) 146, 283, 299, 673
NciI CCSGG 1 cut(s) 698
NdeII GATC 5 cut(s) 213, 488, 589, 643, 733
NlaIII CATG 8 cut(s) 159, 281, 341, 352, 497, 709, 731, 800
NlaIV GGNNCC 2 cut(s) 645, 701
NspI RCATGY 3 cut(s) 159, 341, 709
PaeI GCATGC 1 cut(s) 341
PciI ACATGT 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PctI GAATGC 2 cut(s) 81, 132
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 1 cut(s) 711
PleI GAGTC 2 cut(s) 679, 746
PpsI GAGTC 2 cut(s) 679, 746
Ppu21I YACGTR 1 cut(s) 204
PscI ACATGT 1 cut(s) 155
PsiI TTATAA 1 cut(s) 783
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 645, 701
PspPI GGNCC 3 cut(s) 69, 455, 700
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 3 cut(s) 213, 589, 643
RsaI GTAC 5 cut(s) 206, 368, 517, 597, 746
RsaNI GTAC 5 cut(s) 205, 367, 516, 596, 745
SaqAI TTAA 2 cut(s) 23, 681
SatI GCNGC 1 cut(s) 710
Sau3AI GATC 5 cut(s) 213, 488, 589, 643, 733
Sau96I GGNCC 3 cut(s) 69, 455, 700
SchI GAGTC 2 cut(s) 679, 746
ScrFI CCNGG 2 cut(s) 527, 698
SfaNI GCATC 2 cut(s) 249, 488
SfcI CTRYAG 2 cut(s) 300, 447
SinI GGWCC 3 cut(s) 69, 455, 700
SnaBI TACGTA 1 cut(s) 204
SphI GCATGC 1 cut(s) 341
Sse9I AATT 6 cut(s) 101, 469, 599, 627, 677, 812
SsiI CCGC 1 cut(s) 647
SspI AATATT 1 cut(s) 199
SspMI CTAG 3 cut(s) 342, 377, 570
StyD4I CCNGG 2 cut(s) 525, 696
TaaI ACNGT 4 cut(s) 21, 184, 320, 760
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 194
TasI AATT 6 cut(s) 101, 469, 599, 627, 677, 812
TatI WGTACW 1 cut(s) 595
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 2 cut(s) 23, 681
Tru9I TTAA 2 cut(s) 23, 681
TseI GCWGC 1 cut(s) 709
TspDTI ATGAA 3 cut(s) 522, 754, 813
TspGWI ACGGA 1 cut(s) 593
VpaK11BI GGWCC 3 cut(s) 69, 455, 700
XapI RAATTY 1 cut(s) 812
XceI RCATGY 3 cut(s) 159, 341, 709
XspI CTAG 3 cut(s) 342, 377, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.