Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002296.1

Orthogroup ID

OG0016455

Physical Location & Seq

Genomic Coordinates Reverse (-)

9274 .. 9939

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002296.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgagctactttagagagttggtaaactgcattgttggggttctttcaggcatttatttgctggagcatgatttgctcttagctttctatgcagaatttcaggagaattgtcagaatttctttcagcatgctagtaacatggaaagagaaagtgagtatgccgagctagttattcagtttatattgttacttggagaacaagcaatgcagaatggtgaaagttggcctttggcttctggagttggaccaatggtggaagatacattcctgcatatgttcaaagcaagttttgttcgatggtgtctcagtgggagtagttgctccataaatgcttgtcttgacctgttacttgcattgcttgacgatgaatatttctccgagcagcgagatagtgttatcagatatgatactaacctggagcgttctggatatgcaccctgttttttagattctgaccggatattatattccatcacattgacatctttgagctgcttatgtaagcttgaagttctggactgtcactctcaggatccctatgagaaacaaaatctgctagaccaacttctttgtgaaggtgatggatggcctttgccagttctggatttcagcaggccagagggattagttgccagggacatatctgctgaccatgtgagtgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

221

Amino Acids

25.11

Weight (kDa)

4.28

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016455)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0061981
rosa_laevigata	RLG00000035524
rosa_multiflora	Rmu_sc0000680.1_g000045 Rmu_sc0002296.1_g000002
rosa_roxburghii	Rroxscaffold_1G00018730 Rroxscaffold_1G00018740
rosa_samantha	Rh5AG368800 Rh5AG406400 Rh5AG406500 Rh5BG420000 Rh5CG402600 Rh5CG444100 Rh5DG435300 Rh6BG228800
rosa_wichuraiana	Rw5G038320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	527, 540
AcsI	RAATTY	2 cut(s)	95, 115
AgsI	TTSAA	2 cut(s)	280, 509
AjnI	CCWGG	2 cut(s)	414, 632
AluBI	AGCT	5 cut(s)	6, 83, 166, 492, 505
AluI	AGCT	5 cut(s)	6, 83, 166, 492, 505
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	527, 540
AoxI	GGCC	3 cut(s)	224, 587, 614
ApeKI	GCWGC	2 cut(s)	382, 492
ApoI	RAATTY	2 cut(s)	95, 115
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	227, 590
AvaII	GGWCC	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	394, 479
BccI	CCATC	4 cut(s)	291, 479, 575, 579
BciT130I	CCWGG	2 cut(s)	416, 634
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	3 cut(s)	132, 167, 557
BisI	GCNGC	2 cut(s)	383, 493
BlsI	GCNGC	2 cut(s)	384, 494
Bme1390I	CCNGG	2 cut(s)	416, 634
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	2 cut(s)	416, 634
BpmI	CTGGAG	3 cut(s)	83, 258, 437
BsaJI	CCNNGG	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	2 cut(s)	210, 353
BseBI	CCWGG	2 cut(s)	416, 634
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	1 cut(s)	590
BseMI	GCAATG	2 cut(s)	210, 353
BseMII	CTCAG	2 cut(s)	319, 542
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	2 cut(s)	394, 479
BshFI	GGCC	3 cut(s)	226, 589, 616
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	650
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	226, 589, 616
Bsp143I	GATC	1 cut(s)	532
BspANI	GGCC	3 cut(s)	226, 589, 616
BspCNI	CTCAG	2 cut(s)	318, 541
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	527, 540
BsrDI	GCAATG	2 cut(s)	210, 353
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	1 cut(s)	532
Bst2UI	CCWGG	2 cut(s)	416, 634
Bst4CI	ACNGT	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	129, 614
BstDEI	CTNAG	3 cut(s)	79, 305, 528
BstF5I	GGATG	1 cut(s)	590
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 89
BstNI	CCWGG	2 cut(s)	416, 634
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	414, 632
BstV1I	GCAGC	2 cut(s)	394, 479
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	226, 589, 616
BtsCI	GGATG	1 cut(s)	590
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	129, 614
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	4 cut(s)	68, 128, 139, 653
CviJI	RGCY	9 cut(s)	6, 83, 166, 226, 233, 492, 505, 589, 616
CviKI_1	RGCY	9 cut(s)	6, 83, 166, 226, 233, 492, 505, 589, 616
DdeI	CTNAG	3 cut(s)	79, 305, 528
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	414, 632
FaeI	CATG	4 cut(s)	71, 131, 142, 656
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	4 cut(s)	67, 127, 138, 652
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	383, 493
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	2 cut(s)	383, 493
FspBI	CTAG	3 cut(s)	132, 167, 557
GluI	GCNGC	2 cut(s)	383, 493
GsuI	CTGGAG	3 cut(s)	83, 258, 437
HaeIII	GGCC	3 cut(s)	226, 589, 616
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	4 cut(s)	71, 131, 142, 656
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	2 cut(s)	227, 590
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	114, 379, 401, 454
Hpy188III	TCNNGA	7 cut(s)	101, 237, 338, 426, 515, 530, 602
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4V	TGCA	6 cut(s)	30, 92, 208, 271, 353, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 89
HpyF3I	CTNAG	3 cut(s)	79, 305, 528
Hsp92II	CATG	4 cut(s)	71, 131, 142, 656
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	3 cut(s)	64, 326, 418
Lsp1109I	GCAGC	2 cut(s)	394, 479
MaeI	CTAG	3 cut(s)	132, 167, 557
MaeIII	GTNAC	4 cut(s)	134, 186, 345, 521
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MboII	GAAGA	1 cut(s)	269
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	3 cut(s)	95, 106, 115
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	1 cut(s)	613
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	2 cut(s)	416, 634
MvaI	CCWGG	2 cut(s)	416, 634
MwoI	GCNNNNNNNGC	2 cut(s)	73, 89
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	71, 131, 142, 656
NlaIV	GGNNCC	1 cut(s)	534
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	521
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	384, 494
Psp6I	CCWGG	2 cut(s)	414, 632
PspGI	CCWGG	2 cut(s)	414, 632
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	657
SatI	GCNGC	2 cut(s)	383, 493
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	416, 634
SetI	ASST	8 cut(s)	8, 85, 168, 345, 417, 494, 507, 580
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	657
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	3 cut(s)	95, 106, 115
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	3 cut(s)	132, 167, 557
StyD4I	CCNGG	2 cut(s)	414, 632
TaaI	ACNGT	1 cut(s)	521
TaqI	TCGA	1 cut(s)	295
TasI	AATT	3 cut(s)	95, 106, 115
TfiI	GAWTC	1 cut(s)	449
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	382, 492
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	95, 115
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	3 cut(s)	132, 167, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.