RchiOBHm_Chr5g0066291

DnaJ homolog subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011368
Physical Location & Seq
Forward (+)
72413875 .. 72417187
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
ATGCATGGTTTTCTGGCTCTACTGCCTCTAACACCACCACACCTCTATTTCTTCAACCTCTCTTCTTCTTCTTCTTCAAGATCTCTTCTTTACCTGCAAATCAGACCCAAATCTTCAACACCCATTCTGGGGTACCCCTCAAAAACCAACCTGAATCTCGTCGTGTTCTCCTCCCACTCTTCGAGTTTCTCGAATTTCAGTAGCAAACGACGACGCTTTGTTACGAGAGCGAGCCGCAGGGAGTCCCCGTACCAAGTTTTGGGGGTGTCTCCTTCTGCTACTGATGTCGAGATCAAAAAGGCGTATCGGAAACTTGCCCTCAAGTATCACCCAGATGTTAATAAAGAGCCAAATGCGCAGGAGAAATTTATGAGGATTAAACATGCCTATAGTACATTGCTGAATTCAAAATCTCGGGGGAATTATGACTCTAATTATGGATCTGACTATTCCTATTCTGATTCTCAAAAGAGCCAAAGTAAGAAGGCTCAAGATGAAGAAGAGTTTTATGGATTCGAGGACTTCTTTAAAGATATTCAAGCAGAATTCCAGAACTGGGAAGAAAGTGCTTCTACACAAGGAAAGCCAAGGAGTTTGTGGGAGGAATTGTCGGAAATTGGAGAAGAATTTGTAGAATTTCTTGAGAAAGAACTCAACATAACAGATCCAGAGGTTGGATCAGATAACATCAATGAAGGGCCTGAGAAGGGTCCATTCAGAAATTCTGGGAAAGAGACAACGGAAAGTGCAAGTAAAAAGGAAGCCAGTATGGGGGCTAGTATTGAAGAGAATATTGATGAGATAGAAGCTACTCTTGCTCAGCTGAAAAGGGAATTGGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

281

Amino Acids

31.88

Weight (kDa)

5.71

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 83 - 143 1.7e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59610 AT5G59610 AT5G59610 AT5G59610 AT5G59610
fragaria_vesca FvH4_3g36901
malus_domestica MD03G1086600.v1.1 MD11G1095700.v1.1
prunus_persica Prupe.6G071200_v2.0.a1 Prupe.6G071200_v2.0.a1
pyrus_communis pycom05g24500
rosa_chinensis RchiOBHm_Chr5g0066291
rosa_laevigata RLG00000035848
rosa_multiflora Rmu_sc0006887.1_g000014
rosa_rugosa Rorug05G0376900
rosa_samantha Rh5AG435500 Rh5BG451700 Rh5CG474000 Rh5DG466600
rosa_wichuraiana Rw5G040780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 102
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 2 cut(s) 259, 674
AciI CCGC 1 cut(s) 235
AclWI GGATC 3 cut(s) 448, 659, 685
AcsI RAATTY 7 cut(s) 193, 365, 403, 545, 626, 635, 721
AfaI GTAC 3 cut(s) 134, 251, 394
AfiI CCNNNNNNNGG 7 cut(s) 128, 129, 259, 556, 674, 707, 771
AgsI TTSAA 6 cut(s) 55, 78, 117, 408, 539, 785
AjuI GAANNNNNNNTTGG 1 cut(s) 818
AluBI AGCT 2 cut(s) 809, 823
AluI AGCT 2 cut(s) 809, 823
Alw26I GTCTC 2 cut(s) 273, 728
AlwI GGATC 3 cut(s) 448, 659, 685
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 1 cut(s) 698
ApoI RAATTY 7 cut(s) 193, 365, 403, 545, 626, 635, 721
Asp718I GGTACC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 698, 710
AsuHPI GGTGA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 710
BanI GGYRCC 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 273, 728
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 388
BfuAI ACCTGC 1 cut(s) 102
BglII AGATCT 1 cut(s) 80
BisI GCNGC 1 cut(s) 235
BlpI GCTNAGC 1 cut(s) 819
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 710
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 2 cut(s) 698, 710
BmiI GGNNCC 2 cut(s) 134, 711
BmrI ACTGGG 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 565
Bpu1102I GCTNAGC 1 cut(s) 819
BpuEI CTTGAG 3 cut(s) 305, 474, 662
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 593, 623
Bsc4I CCNNNNNNNGG 7 cut(s) 128, 129, 259, 556, 674, 707, 771
Bse1I ACTGG 2 cut(s) 560, 765
Bse3DI GCAATG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 587
BseLI CCNNNNNNNGG 7 cut(s) 128, 129, 259, 556, 674, 707, 771
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 693, 833
BseNI ACTGG 2 cut(s) 560, 765
BseRI GAGGAG 1 cut(s) 160
BshFI GGCC 1 cut(s) 700
BshNI GGYRCC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 7 cut(s) 128, 129, 259, 556, 674, 707, 771
BsmAI GTCTC 2 cut(s) 273, 728
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 700
BsoBI CYCGRG 1 cut(s) 414
Bsp143I GATC 5 cut(s) 80, 291, 440, 664, 677
Bsp1720I GCTNAGC 1 cut(s) 819
BspACI CCGC 1 cut(s) 235
BspANI GGCC 1 cut(s) 700
BspCNI CTCAG 2 cut(s) 694, 832
BspLI GGNNCC 2 cut(s) 134, 711
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 3 cut(s) 448, 659, 685
BspT107I GGYRCC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 395
BsrI ACTGG 2 cut(s) 560, 765
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 5 cut(s) 80, 291, 440, 664, 677
BssT1I CCWWGG 1 cut(s) 587
Bst6I CTCTTC 5 cut(s) 67, 90, 184, 495, 780
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 702, 819
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 5 cut(s) 83, 294, 443, 667, 680
BstMAI GTCTC 2 cut(s) 273, 728
BstMBI GATC 5 cut(s) 80, 291, 440, 664, 677
BstMWI GCNNNNNNNGC 2 cut(s) 355, 815
BstNSI RCATGY 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 388
BstX2I RGATCY 3 cut(s) 80, 440, 664
BstYI RGATCY 3 cut(s) 80, 440, 664
BsuRI GGCC 1 cut(s) 700
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 698, 710
CseI GACGC 1 cut(s) 222
Csp6I GTAC 3 cut(s) 133, 250, 393
CviAII CATG 2 cut(s) 5, 383
CviQI GTAC 3 cut(s) 133, 250, 393
DdeI CTNAG 2 cut(s) 702, 819
DpnI GATC 5 cut(s) 82, 293, 442, 666, 679
DpnII GATC 5 cut(s) 80, 291, 440, 664, 677
DraI TTTAAA 1 cut(s) 529
Eam1104I CTCTTC 5 cut(s) 67, 90, 184, 495, 780
EarI CTCTTC 5 cut(s) 67, 90, 184, 495, 780
Eco130I CCWWGG 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 698
EcoRI GAATTC 2 cut(s) 403, 545
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 2 cut(s) 8, 386
FaiI YATR 9 cut(s) 6, 371, 384, 390, 426, 438, 510, 659, 770
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 4, 382
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 777
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 235
HaeIII GGCC 1 cut(s) 700
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 8, 386
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 5 cut(s) 154, 242, 428, 461, 513
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 7 cut(s) 104, 309, 445, 460, 613, 682, 719
Hpy188III TCNNGA 7 cut(s) 78, 190, 289, 491, 550, 641, 668
Hpy99I CGWCG 3 cut(s) 164, 213, 216
HpyAV CCTTC 4 cut(s) 282, 478, 689, 700
HpyCH4V TGCA 3 cut(s) 4, 97, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 355, 815
HpyF3I CTNAG 2 cut(s) 702, 819
Hsp92II CATG 2 cut(s) 8, 386
HspAI GCGC 1 cut(s) 356
KpnI GGTACC 1 cut(s) 136
Kzo9I GATC 5 cut(s) 80, 291, 440, 664, 677
MaeI CTAG 1 cut(s) 777
MaeIII GTNAC 1 cut(s) 220
MalI GATC 5 cut(s) 82, 293, 442, 666, 679
MboI GATC 5 cut(s) 80, 291, 440, 664, 677
MflI RGATCY 3 cut(s) 80, 440, 664
MlyI GAGTC 2 cut(s) 251, 422
MmeI TCCRAC 2 cut(s) 591, 655
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 339, 378, 528
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 823
MwoI GCNNNNNNNGC 2 cut(s) 355, 815
NdeII GATC 5 cut(s) 80, 291, 440, 664, 677
NlaIII CATG 2 cut(s) 8, 386
NlaIV GGNNCC 2 cut(s) 134, 711
NsbI TGCGCA 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 3 cut(s) 154, 461, 513
PflMI CCANNNNNTGG 2 cut(s) 259, 674
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 2 cut(s) 250, 422
PpsI GAGTC 2 cut(s) 250, 422
PspN4I GGNNCC 2 cut(s) 134, 711
PspPI GGNCC 2 cut(s) 698, 710
PsuI RGATCY 3 cut(s) 80, 440, 664
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 3 cut(s) 134, 251, 394
RsaNI GTAC 3 cut(s) 133, 250, 393
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 339, 378, 528
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 5 cut(s) 80, 291, 440, 664, 677
Sau96I GGNCC 2 cut(s) 698, 710
SchI GAGTC 2 cut(s) 251, 422
SetI ASST 7 cut(s) 45, 60, 96, 153, 675, 811, 825
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 320, 489, 641
SmoI CTYRAG 3 cut(s) 320, 489, 641
SsiI CCGC 1 cut(s) 235
SspI AATATT 1 cut(s) 793
SspMI CTAG 1 cut(s) 777
StyI CCWWGG 1 cut(s) 587
TaqI TCGA 4 cut(s) 182, 191, 288, 516
TatI WGTACW 1 cut(s) 392
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 3 cut(s) 154, 461, 513
Tru1I TTAA 3 cut(s) 339, 378, 528
Tru9I TTAA 3 cut(s) 339, 378, 528
TspDTI ATGAA 2 cut(s) 510, 708
TspGWI ACGGA 1 cut(s) 755
Van91I CCANNNNNTGG 2 cut(s) 259, 674
VpaK11BI GGWCC 1 cut(s) 710
XapI RAATTY 7 cut(s) 193, 365, 403, 545, 626, 635, 721
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XspI CTAG 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.