RchiOBHm_Chr4g0400271

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008907
Physical Location & Seq
Forward (+)
17822005 .. 17823111
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 804 bp
ATGGCGAGCAGGTCCCGAAAAGACGGAAGTGGGTTCTTAACGGGTACAAATAGTACTGGGATTACTGATACTATTAGGAGTGAGCGTATCCAGTTTACTGATTCGTTGACCAGCGAAGAAATCGAGAAACTCATCAATGAAAAGCATTCTCCGGAGGACAACACTGACTTTGCTGTTGATGTCCTTTTAACGATCACTGAGACCATCATTGGTCGTGCAACCCGTGATTCGATAGTCAATGATATACTGAAGGAGGCCAATGCTCCATCTGAGAAGTTCCCCAGCATCAACAAAAGCTTCATCTCGCCATTGTGCATTCTTAAGTCCATTTGCTGCGAGATCTCATCATGTAAGGATAAGGCTTGTTCTGGTGAAGAAATTTCCATCCAAACAAGGACGGAAGTGATATTTGACAAGCTTAAACCCTATGCATGGGAGGCTAAGGCAGTGCTGGCCCTAGCGGCTTTCGCTTTGGAATATGGAGACTTCTGGCACCTCGCCCAGCTCTATGGTCAATGTAACCAACTTACCGATTCAGTGACTACACTGAAGCGAGTACCCGACGTTAAAGCGCCCTTGAAGAAATGCGAGGGGGAAGTACTTGAGCTGAATCGTCTCATCAAGGATACTTTGGAAGTGACTCGTTTGATATGTAAGGTTGAGGATCTTTATATTCACAACCGTACAGAGGATGCACCAACGTTGTACGCTGCAGTAGAATGTATCCCGATCTGTGTCTTTTGGACAATCACAGCAATTGTAGCTTGCGCTGCTAAGGTCATCGATCTCACTAGTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

267

Amino Acids

29.63

Weight (kDa)

4.93

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 39 - 264 2e-49 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 1 cut(s) 461
AclI AACGTT 1 cut(s) 701
AclWI GGATC 1 cut(s) 672
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 2 cut(s) 269, 569
AfaI GTAC 6 cut(s) 46, 55, 558, 600, 685, 707
AfiI CCNNNNNNNGG 2 cut(s) 432, 688
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 1 cut(s) 580
AhlI ACTAGT 1 cut(s) 791
AluBI AGCT 5 cut(s) 297, 418, 505, 607, 764
AluI AGCT 5 cut(s) 297, 418, 505, 607, 764
Alw26I GTCTC 3 cut(s) 194, 477, 620
AlwI GGATC 1 cut(s) 672
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 2 cut(s) 255, 453
ApeKI GCWGC 3 cut(s) 333, 710, 770
ApoI RAATTY 1 cut(s) 378
AspLEI GCGC 2 cut(s) 574, 770
AspS9I GGNCC 2 cut(s) 12, 454
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 12
BanI GGYRCC 1 cut(s) 492
BbvI GCAGC 3 cut(s) 320, 697, 757
BccI CCATC 3 cut(s) 212, 274, 392
BciVI GTATCC 3 cut(s) 98, 619, 734
BcoDI GTCTC 3 cut(s) 194, 477, 620
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 2 cut(s) 458, 792
BfmI CTRYAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 575
BfrI CTTAAG 1 cut(s) 320
BfuI GTATCC 3 cut(s) 98, 619, 734
BglI GCCNNNNNGGC 1 cut(s) 461
BglII AGATCT 1 cut(s) 339
BisI GCNGC 4 cut(s) 334, 462, 711, 771
BlsI GCNGC 4 cut(s) 335, 463, 712, 772
BmcAI AGTACT 2 cut(s) 55, 600
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 12, 454
BmiI GGNNCC 2 cut(s) 14, 494
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 294, 682
BmuI ACTGGG 1 cut(s) 66
Bpu10I CCTNAGC 2 cut(s) 441, 774
BpuEI CTTGAG 1 cut(s) 623
Bsa29I ATCGAT 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 2 cut(s) 432, 688
Bse1I ACTGG 2 cut(s) 61, 91
BseAI TCCGGA 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 783
BseGI GGATG 2 cut(s) 384, 697
BseLI CCNNNNNNNGG 2 cut(s) 432, 688
BseMII CTCAG 2 cut(s) 189, 261
BseNI ACTGG 2 cut(s) 61, 91
BseXI GCAGC 3 cut(s) 320, 697, 757
BseYI CCCAGC 2 cut(s) 281, 501
BshFI GGCC 2 cut(s) 257, 455
BshNI GGYRCC 1 cut(s) 492
BshVI ATCGAT 1 cut(s) 783
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 432, 688
BsmAI GTCTC 3 cut(s) 194, 477, 620
BsmBI CGTCTC 1 cut(s) 620
BsmI GAATGC 2 cut(s) 145, 315
BsnI GGCC 2 cut(s) 257, 455
Bso31I GGTCTC 1 cut(s) 194
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 5 cut(s) 192, 339, 664, 729, 784
BspACI CCGC 1 cut(s) 461
BspANI GGCC 2 cut(s) 257, 455
BspCNI CTCAG 2 cut(s) 190, 262
BspDI ATCGAT 1 cut(s) 783
BspEI TCCGGA 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 14, 494
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 492
BspTI CTTAAG 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 2 cut(s) 61, 91
BssMI GATC 5 cut(s) 192, 339, 664, 729, 784
Bst4CI ACNGT 1 cut(s) 683
BstAFI CTTAAG 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 7, 453, 766
BstDEI CTNAG 4 cut(s) 198, 270, 441, 774
BstF5I GGATG 2 cut(s) 384, 697
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 2 cut(s) 574, 770
BstKTI GATC 5 cut(s) 195, 342, 667, 732, 787
BstMAI GTCTC 3 cut(s) 194, 477, 620
BstMBI GATC 5 cut(s) 192, 339, 664, 729, 784
BstMWI GCNNNNNNNGC 6 cut(s) 437, 452, 461, 467, 761, 770
BstSFI CTRYAG 1 cut(s) 711
BstV1I GCAGC 3 cut(s) 320, 697, 757
BstX2I RGATCY 2 cut(s) 339, 664
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 2 cut(s) 339, 664
Bsu15I ATCGAT 1 cut(s) 783
BsuI GTATCC 3 cut(s) 98, 619, 734
BsuRI GGCC 2 cut(s) 257, 455
BsuTUI ATCGAT 1 cut(s) 783
BtsCI GGATG 2 cut(s) 384, 697
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 162, 195, 453, 543, 545
Cac8I GCNNGC 3 cut(s) 7, 453, 766
CfoI GCGC 2 cut(s) 574, 770
Cfr13I GGNCC 2 cut(s) 12, 454
ClaI ATCGAT 1 cut(s) 783
Csp6I GTAC 6 cut(s) 45, 54, 557, 599, 684, 706
CviAII CATG 2 cut(s) 348, 432
CviQI GTAC 6 cut(s) 45, 54, 557, 599, 684, 706
DdeI CTNAG 4 cut(s) 198, 270, 441, 774
DpnI GATC 5 cut(s) 194, 341, 666, 731, 786
DpnII GATC 5 cut(s) 192, 339, 664, 729, 784
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 269, 569
EcoO109I RGGNCCY 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 620
FaeI CATG 2 cut(s) 351, 435
FaiI YATR 8 cut(s) 245, 349, 429, 433, 480, 510, 652, 672
FatI CATG 2 cut(s) 347, 431
Fnu4HI GCNGC 4 cut(s) 334, 462, 711, 771
FokI GGATG 2 cut(s) 371, 704
Fsp4HI GCNGC 4 cut(s) 334, 462, 711, 771
FspBI CTAG 2 cut(s) 458, 792
GlaI GCGC 2 cut(s) 573, 769
GluI GCNGC 4 cut(s) 334, 462, 711, 771
GsaI CCCAGC 2 cut(s) 285, 505
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 2 cut(s) 257, 455
HapII CCGG 1 cut(s) 152
HhaI GCGC 2 cut(s) 574, 770
Hin1II CATG 2 cut(s) 351, 435
Hin6I GCGC 2 cut(s) 572, 768
HinP1I GCGC 2 cut(s) 572, 768
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 2 cut(s) 295, 416
HinfI GANTC 5 cut(s) 101, 227, 533, 610, 640
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 96, 108
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 4 cut(s) 15, 124, 152, 727
Hpy8I GTNNAC 2 cut(s) 96, 108
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 2 cut(s) 564, 701
HpyCH4V TGCA 5 cut(s) 218, 315, 431, 695, 713
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 452, 461, 467, 761, 770
HpyF3I CTNAG 4 cut(s) 198, 270, 441, 774
HpySE526I ACGT 2 cut(s) 564, 701
Hsp92II CATG 2 cut(s) 351, 435
HspAI GCGC 2 cut(s) 572, 768
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 5 cut(s) 192, 339, 664, 729, 784
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 9 cut(s) 42, 104, 124, 165, 295, 354, 437, 475, 515
Lsp1109I GCAGC 3 cut(s) 320, 697, 757
LweI GCATC 2 cut(s) 294, 682
MaeI CTAG 2 cut(s) 458, 792
MaeII ACGT 2 cut(s) 564, 701
MaeIII GTNAC 3 cut(s) 518, 538, 637
MalI GATC 5 cut(s) 194, 341, 666, 731, 786
MboI GATC 5 cut(s) 192, 339, 664, 729, 784
MboII GAAGA 3 cut(s) 128, 386, 592
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 2 cut(s) 339, 664
MluCI AATT 2 cut(s) 378, 756
MlyI GAGTC 1 cut(s) 634
MnlI CCTC 7 cut(s) 148, 247, 430, 506, 583, 655, 682
Mph1103I ATGCAT 1 cut(s) 433
MroI TCCGGA 1 cut(s) 151
MseI TTAA 5 cut(s) 38, 188, 321, 420, 567
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 2 cut(s) 145, 315
MwoI GCNNNNNNNGC 6 cut(s) 437, 452, 461, 467, 761, 770
NdeII GATC 5 cut(s) 192, 339, 664, 729, 784
NlaIII CATG 2 cut(s) 351, 435
NlaIV GGNNCC 2 cut(s) 14, 494
NmuCI GTSAC 2 cut(s) 538, 637
NsiI ATGCAT 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PctI GAATGC 2 cut(s) 145, 315
PfeI GAWTC 4 cut(s) 101, 227, 533, 610
PkrI GCNGC 4 cut(s) 335, 463, 712, 772
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 701
Psp5II RGGWCCY 1 cut(s) 12
PspFI CCCAGC 2 cut(s) 281, 501
PspN4I GGNNCC 2 cut(s) 14, 494
PspPI GGNCC 2 cut(s) 12, 454
PspPPI RGGWCCY 1 cut(s) 12
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 2 cut(s) 339, 664
RsaI GTAC 6 cut(s) 46, 55, 558, 600, 685, 707
RsaNI GTAC 6 cut(s) 45, 54, 557, 599, 684, 706
SaqAI TTAA 5 cut(s) 38, 188, 321, 420, 567
SatI GCNGC 4 cut(s) 334, 462, 711, 771
Sau3AI GATC 5 cut(s) 192, 339, 664, 729, 784
Sau96I GGNCC 2 cut(s) 12, 454
ScaI AGTACT 2 cut(s) 55, 600
SchI GAGTC 1 cut(s) 634
SfaNI GCATC 2 cut(s) 294, 682
SfcI CTRYAG 1 cut(s) 711
SinI GGWCC 1 cut(s) 12
SmlI CTYRAG 2 cut(s) 320, 602
SmoI CTYRAG 2 cut(s) 320, 602
SpeI ACTAGT 1 cut(s) 791
Sse9I AATT 2 cut(s) 378, 756
SsiI CCGC 1 cut(s) 461
SspMI CTAG 2 cut(s) 458, 792
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 2 cut(s) 567, 704
TaqI TCGA 3 cut(s) 123, 230, 783
TasI AATT 2 cut(s) 378, 756
TatI WGTACW 2 cut(s) 53, 598
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 4 cut(s) 101, 227, 533, 610
Tru1I TTAA 5 cut(s) 38, 188, 321, 420, 567
Tru9I TTAA 5 cut(s) 38, 188, 321, 420, 567
TscAI CASTG 5 cut(s) 169, 202, 453, 543, 552
TseFI GTSAC 2 cut(s) 538, 637
TseI GCWGC 3 cut(s) 333, 710, 770
Tsp45I GTSAC 2 cut(s) 538, 637
TspDTI ATGAA 2 cut(s) 153, 289
TspGWI ACGGA 2 cut(s) 39, 413
TspRI CASTG 5 cut(s) 169, 202, 453, 543, 552
Vha464I CTTAAG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 378
XspI CTAG 2 cut(s) 458, 792
ZrmI AGTACT 2 cut(s) 55, 600
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.