Rh4AG030800

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008907
Physical Location & Seq
Forward (+)
6444968 .. 6447269
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG030800.1

Sequence Viewer

Length: 1437 bp
ATGGAAAGTATTCTCCGGGGGACAGCACTGCCTTTGTTGTTGGTGATCTTTTCACGATCAGCTAAGACCATCATTGATCATGCAACCCGTAATTCGATGGTCGATGATATTCTGAAGTCGGTCAATGCCCTGAATGAGAAGGTCCCCAACATCAACGACAGCTTCATCTCGCCATTGTGCACTCTTAAGTCCATTTGCTGCGAGATGTCATCATGTATGGATAAGGCTTGTTCTGGTCAAGAAATTTCCATTCAACCAAGGACGGAAGTGATATTTGACAAGCTAAAACCCTATCCATGGGACGCTAAGGCAGTGCTGGCCCTAGCGGCTTTTGCTTTGGAATACGGAGACTTCTGGCACCTCGCCCAGCTCTATGGCCAATGTAACCAACTCACCAATTCACTGGCTATCCTGAAGCGAGTACCCGTCCTTACCAAGCATGCGACCTTGGAGAAACGCAAGGAGGAAGTACTTGAGCTGAACCATCTCATCAAGGCTACTTTGCAAGTGACTGATTTCATCTTTAAGGTTGAGGATCTTTTTGTTCACAATCATAACGAGAATGTAAAAGAGTTGGACAAGGCAGTAAAGAGTATCCCAACCTATGTCTTCTGGACCATCACAACAATTGTAGCTTGCGCGGTTAAGGTCACCCAGCTCACTAGTGATGAGGAGAAGCCATACCCTCTATCCTATCTTGTTACTAAAATCGAGGGCATACTGAAGATCCTTGAGAAACAGCATGCAAGTTGCGAAAAAGAACTAGATAAATTAAAGAAGCACAGGAAGTTGGTCAGGATAATGTCGGAAGCCCGAAGCACTCATCAGATCATGAACGTTATTAACACCCTGATTCAGTTCAGGGATGATGGGAAGCTACCCACCATTAGTGTCGGTAGCAGTGTCAAGGAGGTTAAATCTGAAATATTTATCGCAGAAATAAAGAAAAATTATGTGCTGTTTTACATTTCAACTTTGGAGAACAATAAGAAGGATGACAGTTCACATCTGAAAGAAGTTCATGATGAATTTCCTAAAAAGTATCCAAATTGGACGATTGTGTGGATCCCTATTGTGGAAGATTGGACGGAAGACCATAGAAAAAAGTTTGAGGAGTTGGCATCGGAGATGCCATGGTACAAGGTCCAGTTTTTTTCTTCAATAGTGATCAAGTTCCTCAGCGCGGACGACAGGTTGTCCTTCAAGGGTAATCCGAAGTGCGTGGTGATGAGCCCACAAGCGCAACTGCAAAGCCACAATACACTCGACTTGATCCGGAAATATGGAATCAATTTCTTTGATCATTTGTTTCCAGTGGTGGTCCCTCCAGGCCCTCTACCGGTGGTCCCTCCAGAGGACCCCCGCTTAGAAGTTAGAACTAAAGCCATTTTTTGGGAGTTTGAAGAACGAAGAACTCAAAAAGTCGAGCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

478

Amino Acids

55.04

Weight (kDa)

7.96

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 22 - 268 7.6e-49 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 1392
AccII CGCG 2 cut(s) 641, 1184
AccIII TCCGGA 1 cut(s) 1275
AciI CCGC 4 cut(s) 326, 641, 1184, 1363
AclI AACGTT 1 cut(s) 837
AclWI GGATC 5 cut(s) 543, 721, 1060, 1073, 1267
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 2 cut(s) 243, 1028
AcuI CTGAAG 3 cut(s) 134, 434, 743
AfaI GTAC 3 cut(s) 423, 471, 1139
AfiI CCNNNNNNNGG 6 cut(s) 297, 1075, 1183, 1339, 1354, 1392
AflII CTTAAG 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 1339
AgsI TTSAA 5 cut(s) 254, 972, 1161, 1204, 1403
AhdI GACNNNNNGTC 1 cut(s) 1195
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 1327
AluBI AGCT 8 cut(s) 62, 162, 283, 370, 478, 635, 658, 877
AluI AGCT 8 cut(s) 62, 162, 283, 370, 478, 635, 658, 877
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 342
Alw44I GTGCAC 1 cut(s) 178
AlwI GGATC 5 cut(s) 543, 721, 1060, 1073, 1267
Aor13HI TCCGGA 1 cut(s) 1275
AoxI GGCC 3 cut(s) 318, 376, 1330
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 2 cut(s) 243, 1028
AsiGI ACCGGT 1 cut(s) 1339
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 3 cut(s) 641, 1184, 1243
AspS9I GGNCC 8 cut(s) 142, 319, 615, 1144, 1321, 1331, 1345, 1357
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 4 cut(s) 55, 385, 643, 1237
AvaII GGWCC 6 cut(s) 142, 615, 1144, 1321, 1345, 1357
BaeGI GKGCMC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 378
BamHI GGATCC 1 cut(s) 1065
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 1 cut(s) 1235
BbsI GAAGAC 2 cut(s) 601, 1098
Bbv12I GWGCWC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 1178
BbvI GCAGC 1 cut(s) 185
BccI CCATC 5 cut(s) 77, 91, 492, 626, 863
BciT130I CCWGG 1 cut(s) 1329
BciVI GTATCC 2 cut(s) 605, 1053
BclI TGATCA 3 cut(s) 76, 1167, 1300
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 342
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 3 cut(s) 323, 663, 764
BfrI CTTAAG 1 cut(s) 185
BfuI GTATCC 2 cut(s) 605, 1053
BglI GCCNNNNNGGC 1 cut(s) 326
BisI GCNGC 2 cut(s) 199, 327
BlsI GCNGC 2 cut(s) 200, 328
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 2 cut(s) 17, 1329
Bme18I GGWCC 6 cut(s) 142, 615, 1144, 1321, 1345, 1357
BmeRI GACNNNNNGTC 1 cut(s) 1195
BmgT120I GGNCC 8 cut(s) 142, 319, 615, 1144, 1321, 1331, 1345, 1357
BmiI GGNNCC 6 cut(s) 144, 359, 1067, 1323, 1347, 1359
BmrFI CCNGG 2 cut(s) 17, 1329
BmsI GCATC 2 cut(s) 1119, 1130
BpiI GAAGAC 2 cut(s) 601, 1098
BpmI CTGGAG 2 cut(s) 1311, 1335
Bpu10I CCTNAGC 2 cut(s) 306, 1178
BpuEI CTTGAG 2 cut(s) 494, 752
BpuMI CCSGG 1 cut(s) 17
BsaJI CCNNGG 5 cut(s) 16, 257, 296, 447, 1133
BsaWI WCCGGW 2 cut(s) 1275, 1339
Bsc4I CCNNNNNNNGG 6 cut(s) 297, 1075, 1183, 1339, 1354, 1392
Bse118I RCCGGY 1 cut(s) 1339
Bse1I ACTGG 3 cut(s) 408, 1147, 1313
BseAI TCCGGA 1 cut(s) 1275
BseBI CCWGG 1 cut(s) 1329
BseDI CCNNGG 5 cut(s) 16, 257, 296, 447, 1133
BseGI GGATG 2 cut(s) 871, 1000
BseLI CCNNNNNNNGG 6 cut(s) 297, 1075, 1183, 1339, 1354, 1392
BseMII CTCAG 1 cut(s) 1192
BseNI ACTGG 3 cut(s) 408, 1147, 1313
BseRI GAGGAG 2 cut(s) 686, 1127
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 1 cut(s) 185
BseYI CCCAGC 2 cut(s) 366, 654
Bsh1236I CGCG 2 cut(s) 641, 1184
BshFI GGCC 3 cut(s) 320, 378, 1332
BshNI GGYRCC 1 cut(s) 357
BshTI ACCGGT 1 cut(s) 1339
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 3 cut(s) 16, 1276, 1340
BslFI GGGAC 5 cut(s) 34, 128, 314, 1307, 1331
BslI CCNNNNNNNGG 6 cut(s) 297, 1075, 1183, 1339, 1354, 1392
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 5 cut(s) 34, 128, 314, 1307, 1331
BsnI GGCC 3 cut(s) 320, 378, 1332
Bsp1286I GDGCHC 2 cut(s) 182, 1235
Bsp13I TCCGGA 1 cut(s) 1275
Bsp19I CCATGG 2 cut(s) 296, 1133
BspACI CCGC 4 cut(s) 326, 641, 1184, 1363
BspANI GGCC 3 cut(s) 320, 378, 1332
BspCNI CTCAG 1 cut(s) 1191
BspEI TCCGGA 1 cut(s) 1275
BspFNI CGCG 2 cut(s) 641, 1184
BspHI TCATGA 2 cut(s) 831, 1021
BspLI GGNNCC 6 cut(s) 144, 359, 1067, 1323, 1347, 1359
BspPI GGATC 5 cut(s) 543, 721, 1060, 1073, 1267
BspT107I GGYRCC 1 cut(s) 357
BspTI CTTAAG 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 1339
BsrI ACTGG 3 cut(s) 408, 1147, 1313
BssAI RCCGGY 1 cut(s) 1339
BssECI CCNNGG 5 cut(s) 16, 257, 296, 447, 1133
BssT1I CCWWGG 4 cut(s) 257, 296, 447, 1133
Bst2UI CCWGG 1 cut(s) 1329
Bst4CI ACNGT 1 cut(s) 1001
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 318, 441, 637, 744
BstDEI CTNAG 4 cut(s) 63, 306, 1178, 1366
BstDSI CCRYGG 2 cut(s) 296, 1133
BstEII GGTNACC 1 cut(s) 649
BstF5I GGATG 2 cut(s) 871, 1000
BstFNI CGCG 2 cut(s) 641, 1184
BstHHI GCGC 3 cut(s) 641, 1184, 1243
BstMAI GTCTC 1 cut(s) 342
BstMWI GCNNNNNNNGC 3 cut(s) 317, 326, 332
BstNI CCWGG 1 cut(s) 1329
BstNSI RCATGY 2 cut(s) 443, 746
BstPI GGTNACC 1 cut(s) 649
BstSCI CCNGG 2 cut(s) 15, 1327
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 2 cut(s) 641, 1184
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 2 cut(s) 601, 1098
BstX2I RGATCY 3 cut(s) 535, 726, 1065
BstXI CCANNNNNNTGG 2 cut(s) 374, 403
BstYI RGATCY 3 cut(s) 535, 726, 1065
BsuI GTATCC 2 cut(s) 605, 1053
BsuRI GGCC 3 cut(s) 320, 378, 1332
BtgI CCRYGG 2 cut(s) 296, 1133
BtsCI GGATG 2 cut(s) 871, 1000
BtsI GCAGTG 3 cut(s) 26, 318, 907
BtsIMutI CAGTG 5 cut(s) 26, 318, 401, 907, 1320
Cac8I GCNNGC 4 cut(s) 318, 441, 637, 744
CciI TCATGA 2 cut(s) 831, 1021
CfoI GCGC 3 cut(s) 641, 1184, 1243
Cfr10I RCCGGY 1 cut(s) 1339
Cfr13I GGNCC 8 cut(s) 142, 319, 615, 1144, 1321, 1331, 1345, 1357
CseI GACGC 1 cut(s) 311
Csp6I GTAC 3 cut(s) 422, 470, 1138
CspAI ACCGGT 1 cut(s) 1339
CviAII CATG 8 cut(s) 80, 213, 297, 440, 743, 832, 1022, 1134
CviQI GTAC 3 cut(s) 422, 470, 1138
DdeI CTNAG 4 cut(s) 63, 306, 1178, 1366
DriI GACNNNNNGTC 1 cut(s) 1195
EaeI YGGCCR 1 cut(s) 376
Eam1105I GACNNNNNGTC 1 cut(s) 1195
Eco130I CCWWGG 4 cut(s) 257, 296, 447, 1133
Eco24I GRGCYC 1 cut(s) 1235
Eco47I GGWCC 6 cut(s) 142, 615, 1144, 1321, 1345, 1357
Eco57I CTGAAG 3 cut(s) 134, 434, 743
Eco91I GGTNACC 1 cut(s) 649
EcoO109I RGGNCCY 3 cut(s) 142, 1331, 1357
EcoO65I GGTNACC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 1327
EcoT14I CCWWGG 4 cut(s) 257, 296, 447, 1133
EcoT38I GRGCYC 1 cut(s) 1235
ErhI CCWWGG 4 cut(s) 257, 296, 447, 1133
FaeI CATG 8 cut(s) 83, 216, 300, 443, 746, 835, 1025, 1137
FaqI GGGAC 5 cut(s) 34, 128, 314, 1307, 1331
FatI CATG 8 cut(s) 79, 212, 296, 439, 742, 831, 1021, 1133
FauI CCCGC 1 cut(s) 1370
FbaI TGATCA 3 cut(s) 76, 1167, 1300
Fnu4HI GCNGC 2 cut(s) 199, 327
FokI GGATG 2 cut(s) 878, 1007
FriOI GRGCYC 1 cut(s) 1235
Fsp4HI GCNGC 2 cut(s) 199, 327
FspBI CTAG 3 cut(s) 323, 663, 764
GlaI GCGC 3 cut(s) 640, 1183, 1242
GluI GCNGC 2 cut(s) 199, 327
GsaI CCCAGC 2 cut(s) 370, 658
GsuI CTGGAG 2 cut(s) 1311, 1335
HaeIII GGCC 3 cut(s) 320, 378, 1332
HapII CCGG 3 cut(s) 16, 1276, 1340
HgaI GACGC 1 cut(s) 311
HhaI GCGC 3 cut(s) 641, 1184, 1243
Hin1II CATG 8 cut(s) 83, 216, 300, 443, 746, 835, 1025, 1137
Hin6I GCGC 3 cut(s) 639, 1182, 1241
HinP1I GCGC 3 cut(s) 639, 1182, 1241
HinfI GANTC 2 cut(s) 853, 1287
HpaII CCGG 3 cut(s) 16, 1276, 1340
HphI GGTGA 4 cut(s) 55, 385, 643, 1237
Hpy166II GTNNAC 3 cut(s) 180, 547, 1004
Hpy188I TCNGA 7 cut(s) 114, 808, 828, 922, 1011, 1126, 1215
Hpy188III TCNNGA 9 cut(s) 54, 239, 412, 613, 796, 832, 1022, 1276, 1352
Hpy8I GTNNAC 3 cut(s) 180, 547, 1004
HpyAV CCTTC 3 cut(s) 133, 985, 1210
HpyCH4III ACNGT 1 cut(s) 1001
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 5 cut(s) 83, 180, 505, 746, 1249
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 326, 332
HpyF3I CTNAG 4 cut(s) 63, 306, 1178, 1366
HpySE526I ACGT 1 cut(s) 837
Hsp92II CATG 8 cut(s) 83, 216, 300, 443, 746, 835, 1025, 1137
HspAI GCGC 3 cut(s) 639, 1182, 1241
Kpn2I TCCGGA 1 cut(s) 1275
Ksp22I TGATCA 3 cut(s) 76, 1167, 1300
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 2 cut(s) 1119, 1130
MaeI CTAG 3 cut(s) 323, 663, 764
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 4 cut(s) 383, 508, 649, 700
MboII GAAGA 7 cut(s) 601, 736, 1091, 1103, 1149, 1415, 1422
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 3 cut(s) 535, 726, 1065
MhlI GDGCHC 2 cut(s) 182, 1235
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 9 cut(s) 91, 243, 397, 627, 770, 949, 1028, 1048, 1291
MluNI TGGCCA 1 cut(s) 378
MmeI TCCRAC 2 cut(s) 555, 786
Mox20I TGGCCA 1 cut(s) 378
MroI TCCGGA 1 cut(s) 1275
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 378
MseI TTAA 6 cut(s) 186, 525, 645, 773, 843, 915
Msp20I TGGCCA 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 3 cut(s) 16, 1276, 1340
MspR9I CCNGG 2 cut(s) 17, 1329
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 1329
MvnI CGCG 2 cut(s) 641, 1184
MwoI GCNNNNNNNGC 3 cut(s) 317, 326, 332
NciI CCSGG 1 cut(s) 17
NcoI CCATGG 2 cut(s) 296, 1133
NlaIII CATG 8 cut(s) 83, 216, 300, 443, 746, 835, 1025, 1137
NlaIV GGNNCC 6 cut(s) 144, 359, 1067, 1323, 1347, 1359
NmuCI GTSAC 2 cut(s) 508, 649
NspI RCATGY 2 cut(s) 443, 746
PaeI GCATGC 2 cut(s) 443, 746
PagI TCATGA 2 cut(s) 831, 1021
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 853, 1287
PflMI CCANNNNNTGG 1 cut(s) 1392
PinAI ACCGGT 1 cut(s) 1339
PkrI GCNGC 2 cut(s) 200, 328
PpuMI RGGWCCY 2 cut(s) 142, 1357
Psp1406I AACGTT 1 cut(s) 837
Psp5II RGGWCCY 2 cut(s) 142, 1357
Psp6I CCWGG 1 cut(s) 1327
PspEI GGTNACC 1 cut(s) 649
PspFI CCCAGC 2 cut(s) 366, 654
PspGI CCWGG 1 cut(s) 1327
PspN4I GGNNCC 6 cut(s) 144, 359, 1067, 1323, 1347, 1359
PspPI GGNCC 8 cut(s) 142, 319, 615, 1144, 1321, 1331, 1345, 1357
PspPPI RGGWCCY 2 cut(s) 142, 1357
PsuI RGATCY 3 cut(s) 535, 726, 1065
RsaI GTAC 3 cut(s) 423, 471, 1139
RsaNI GTAC 3 cut(s) 422, 470, 1138
SaqAI TTAA 6 cut(s) 186, 525, 645, 773, 843, 915
SatI GCNGC 2 cut(s) 199, 327
Sau96I GGNCC 8 cut(s) 142, 319, 615, 1144, 1321, 1331, 1345, 1357
ScaI AGTACT 1 cut(s) 471
ScrFI CCNGG 2 cut(s) 17, 1329
SduI GDGCHC 2 cut(s) 182, 1235
SfaNI GCATC 2 cut(s) 1119, 1130
SinI GGWCC 6 cut(s) 142, 615, 1144, 1321, 1345, 1357
SmlI CTYRAG 3 cut(s) 185, 473, 731
SmoI CTYRAG 3 cut(s) 185, 473, 731
SpeI ACTAGT 1 cut(s) 662
SphI GCATGC 2 cut(s) 443, 746
Sse9I AATT 9 cut(s) 91, 243, 397, 627, 770, 949, 1028, 1048, 1291
SsiI CCGC 4 cut(s) 326, 641, 1184, 1363
SspI AATATT 1 cut(s) 927
SspMI CTAG 3 cut(s) 323, 663, 764
StyD4I CCNGG 2 cut(s) 15, 1327
StyI CCWWGG 4 cut(s) 257, 296, 447, 1133
TaaI ACNGT 1 cut(s) 1001
TaiI ACGT 1 cut(s) 840
TaqI TCGA 5 cut(s) 95, 102, 711, 1266, 1425
TaqII GACCGA 1 cut(s) 109
TasI AATT 9 cut(s) 91, 243, 397, 627, 770, 949, 1028, 1048, 1291
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 2 cut(s) 853, 1287
Tru1I TTAA 6 cut(s) 186, 525, 645, 773, 843, 915
Tru9I TTAA 6 cut(s) 186, 525, 645, 773, 843, 915
TscAI CASTG 5 cut(s) 33, 318, 408, 907, 1320
TseFI GTSAC 2 cut(s) 508, 649
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 2 cut(s) 508, 649
TspDTI ATGAA 5 cut(s) 154, 508, 848, 1010, 1041
TspGWI ACGGA 3 cut(s) 278, 360, 1103
TspRI CASTG 5 cut(s) 33, 318, 408, 907, 1320
Van91I CCANNNNNTGG 1 cut(s) 1392
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 6 cut(s) 142, 615, 1144, 1321, 1345, 1357
XapI RAATTY 2 cut(s) 243, 1028
XceI RCATGY 2 cut(s) 443, 746
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 3 cut(s) 323, 663, 764
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.