Sieve element occlusion
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0389961 RchiOBHm_Chr4g0400271 RchiOBHm_Chr4g0400571 |
| rosa_laevigata | RLG00000009943 |
| rosa_multiflora | Rmu_sc0003687.1_g000008 Rmu_sc0004336.1_g000023 Rmu_sc0005451.1_g000008 Rmu_ssc0000245.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00336110 Rroxscaffold_5G00345410 |
| rosa_rugosa | Rorug03G0327600 Rorug04G0024500 |
| rosa_samantha | Rh4AG030800 Rh4AG102000 Rh4BG024200 Rh4BG097700 Rh4CG033300 Rh4CG110100 Rh4DG024300 |
| rosa_wichuraiana | Rw4G002340 Rw4G002380 Rw4G008280 Rw4G008290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1802 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2006 |
| AccB1I | GGYRCC | 2 cut(s) | 492, 2063 |
| AccII | CGCG | 1 cut(s) | 588 |
| AccIII | TCCGGA | 2 cut(s) | 151, 1407 |
| AciI | CCGC | 3 cut(s) | 461, 1285, 2013 |
| AclI | AACGTT | 2 cut(s) | 701, 1449 |
| AclWI | GGATC | 6 cut(s) | 643, 672, 1198, 1211, 1267, 1399 |
| AcoI | YGGCCR | 1 cut(s) | 2014 |
| AcsI | RAATTY | 4 cut(s) | 378, 1167, 1424, 1964 |
| AcuI | CTGAAG | 2 cut(s) | 269, 569 |
| AcyI | GRCGYC | 1 cut(s) | 951 |
| AdeI | CACNNNGTG | 1 cut(s) | 1524 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 432, 688, 1213, 1321, 2012 |
| AflII | CTTAAG | 2 cut(s) | 320, 965 |
| AgsI | TTSAA | 4 cut(s) | 580, 1172, 1299, 1573 |
| AhlI | ACTAGT | 1 cut(s) | 791 |
| AjnI | CCWGG | 1 cut(s) | 1113 |
| Alw26I | GTCTC | 5 cut(s) | 194, 477, 620, 1405, 1536 |
| AlwI | GGATC | 6 cut(s) | 643, 672, 1198, 1211, 1267, 1399 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1747 |
| Ama87I | CYCGRG | 1 cut(s) | 1316 |
| Aor13HI | TCCGGA | 2 cut(s) | 151, 1407 |
| AoxI | GGCC | 3 cut(s) | 255, 453, 2014 |
| ApeKI | GCWGC | 7 cut(s) | 333, 710, 770, 921, 931, 1959, 2055 |
| ApoI | RAATTY | 4 cut(s) | 378, 1167, 1424, 1964 |
| AspLEI | GCGC | 3 cut(s) | 574, 770, 846 |
| AspS9I | GGNCC | 4 cut(s) | 12, 454, 1329, 1363 |
| AsuC2I | CCSGG | 1 cut(s) | 1978 |
| AsuHPI | GGTGA | 2 cut(s) | 383, 1369 |
| AvaI | CYCGRG | 1 cut(s) | 1316 |
| AvaII | GGWCC | 3 cut(s) | 12, 1329, 1363 |
| BamHI | GGATCC | 1 cut(s) | 1203 |
| BanI | GGYRCC | 2 cut(s) | 492, 2063 |
| BauI | CACGAG | 1 cut(s) | 1368 |
| BbsI | GAAGAC | 3 cut(s) | 1224, 1880, 1923 |
| BbvI | GCAGC | 7 cut(s) | 320, 697, 757, 908, 918, 1946, 2042 |
| BccI | CCATC | 7 cut(s) | 212, 274, 290, 392, 1189, 1354, 1610 |
| BceAI | ACGGC | 1 cut(s) | 2001 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1650, 1684 |
| BciT130I | CCWGG | 1 cut(s) | 1115 |
| BciVI | GTATCC | 4 cut(s) | 98, 619, 734, 1591 |
| BclI | TGATCA | 1 cut(s) | 1945 |
| BcnI | CCSGG | 1 cut(s) | 1978 |
| BcoDI | GTCTC | 5 cut(s) | 194, 477, 620, 1405, 1536 |
| BcuI | ACTAGT | 1 cut(s) | 791 |
| BfaI | CTAG | 3 cut(s) | 458, 792, 1496 |
| BfmI | CTRYAG | 1 cut(s) | 711 |
| BfoI | RGCGCY | 1 cut(s) | 575 |
| BfrI | CTTAAG | 2 cut(s) | 320, 965 |
| BfuI | GTATCC | 4 cut(s) | 98, 619, 734, 1591 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 461 |
| BglII | AGATCT | 1 cut(s) | 339 |
| BisI | GCNGC | 9 cut(s) | 334, 462, 711, 771, 922, 932, 1960, 2014, 2056 |
| BlsI | GCNGC | 9 cut(s) | 335, 463, 712, 772, 923, 933, 1961, 2015, 2057 |
| BmcAI | AGTACT | 3 cut(s) | 55, 600, 1955 |
| Bme1390I | CCNGG | 2 cut(s) | 1115, 1978 |
| Bme18I | GGWCC | 3 cut(s) | 12, 1329, 1363 |
| BmeT110I | CYCGRG | 1 cut(s) | 1316 |
| BmgT120I | GGNCC | 4 cut(s) | 12, 454, 1329, 1363 |
| BmiI | GGNNCC | 5 cut(s) | 14, 494, 1205, 1365, 2065 |
| BmrFI | CCNGG | 2 cut(s) | 1115, 1978 |
| BmrI | ACTGGG | 2 cut(s) | 66, 2000 |
| BmsI | GCATC | 3 cut(s) | 682, 795, 1257 |
| BmuI | ACTGGG | 2 cut(s) | 66, 2000 |
| BpiI | GAAGAC | 3 cut(s) | 1224, 1880, 1923 |
| BpmI | CTGGAG | 1 cut(s) | 1136 |
| Bpu10I | CCTNAGC | 2 cut(s) | 441, 774 |
| BpuEI | CTTGAG | 1 cut(s) | 623 |
| BpuMI | CCSGG | 1 cut(s) | 1978 |
| Bsa29I | ATCGAT | 1 cut(s) | 783 |
| BsaAI | YACGTR | 2 cut(s) | 1699, 1883 |
| BsaHI | GRCGYC | 1 cut(s) | 951 |
| BsaI | GGTCTC | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 4 cut(s) | 1271, 1353, 1786, 2059 |
| BsaWI | WCCGGW | 2 cut(s) | 151, 1407 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 70, 100, 1040, 1070 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 432, 688, 1213, 1321, 2012 |
| Bse1I | ACTGG | 5 cut(s) | 61, 91, 1226, 1806, 2006 |
| BseAI | TCCGGA | 2 cut(s) | 151, 1407 |
| BseBI | CCWGG | 1 cut(s) | 1115 |
| BseCI | ATCGAT | 1 cut(s) | 783 |
| BseDI | CCNNGG | 4 cut(s) | 1271, 1353, 1786, 2059 |
| BseGI | GGATG | 6 cut(s) | 384, 697, 1200, 1555, 1813, 1889 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 432, 688, 1213, 1321, 2012 |
| BseMII | CTCAG | 2 cut(s) | 189, 261 |
| BseNI | ACTGG | 5 cut(s) | 61, 91, 1226, 1806, 2006 |
| BseRI | GAGGAG | 2 cut(s) | 815, 1061 |
| BseX3I | CGGCCG | 1 cut(s) | 2014 |
| BseXI | GCAGC | 7 cut(s) | 320, 697, 757, 908, 918, 1946, 2042 |
| BseYI | CCCAGC | 1 cut(s) | 501 |
| BsgI | GTGCAG | 1 cut(s) | 917 |
| Bsh1236I | CGCG | 1 cut(s) | 588 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2017 |
| BshFI | GGCC | 3 cut(s) | 257, 455, 2016 |
| BshNI | GGYRCC | 2 cut(s) | 492, 2063 |
| BshVI | ATCGAT | 1 cut(s) | 783 |
| BsiEI | CGRYCG | 1 cut(s) | 2017 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1316 |
| BsiSI | CCGG | 3 cut(s) | 152, 1408, 1977 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 432, 688, 1213, 1321, 2012 |
| BsmAI | GTCTC | 5 cut(s) | 194, 477, 620, 1405, 1536 |
| BsmBI | CGTCTC | 1 cut(s) | 620 |
| BsmI | GAATGC | 2 cut(s) | 145, 315 |
| BsnI | GGCC | 3 cut(s) | 257, 455, 2016 |
| Bso31I | GGTCTC | 1 cut(s) | 194 |
| BsoBI | CYCGRG | 1 cut(s) | 1316 |
| Bsp13I | TCCGGA | 2 cut(s) | 151, 1407 |
| Bsp19I | CCATGG | 2 cut(s) | 1271, 1353 |
| BspACI | CCGC | 3 cut(s) | 461, 1285, 2013 |
| BspANI | GGCC | 3 cut(s) | 257, 455, 2016 |
| BspCNI | CTCAG | 2 cut(s) | 190, 262 |
| BspDI | ATCGAT | 1 cut(s) | 783 |
| BspEI | TCCGGA | 2 cut(s) | 151, 1407 |
| BspFNI | CGCG | 1 cut(s) | 588 |
| BspLI | GGNNCC | 5 cut(s) | 14, 494, 1205, 1365, 2065 |
| BspMAI | CTGCAG | 1 cut(s) | 715 |
| BspPI | GGATC | 6 cut(s) | 643, 672, 1198, 1211, 1267, 1399 |
| BspT107I | GGYRCC | 2 cut(s) | 492, 2063 |
| BspTI | CTTAAG | 2 cut(s) | 320, 965 |
| BspTNI | GGTCTC | 1 cut(s) | 194 |
| BsrI | ACTGG | 5 cut(s) | 61, 91, 1226, 1806, 2006 |
| BssECI | CCNNGG | 4 cut(s) | 1271, 1353, 1786, 2059 |
| BssNI | GRCGYC | 1 cut(s) | 951 |
| BssSI | CACGAG | 1 cut(s) | 1368 |
| BssT1I | CCWWGG | 3 cut(s) | 1271, 1353, 1786 |
| Bst2BI | CACGAG | 1 cut(s) | 1368 |
| Bst2UI | CCWGG | 1 cut(s) | 1115 |
| Bst4CI | ACNGT | 5 cut(s) | 683, 1723, 1749, 1854, 2063 |
| Bst6I | CTCTTC | 1 cut(s) | 1494 |
| BstACI | GRCGYC | 1 cut(s) | 951 |
| BstAFI | CTTAAG | 2 cut(s) | 320, 965 |
| BstBAI | YACGTR | 2 cut(s) | 1699, 1883 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 453, 766, 1742 |
| BstDEI | CTNAG | 5 cut(s) | 198, 270, 441, 774, 1521 |
| BstDSI | CCRYGG | 3 cut(s) | 1271, 1353, 2059 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1319 |
| BstF5I | GGATG | 6 cut(s) | 384, 697, 1200, 1555, 1813, 1889 |
| BstFNI | CGCG | 1 cut(s) | 588 |
| BstH2I | RGCGCY | 1 cut(s) | 575 |
| BstHHI | GCGC | 3 cut(s) | 574, 770, 846 |
| BstMAI | GTCTC | 5 cut(s) | 194, 477, 620, 1405, 1536 |
| BstMCI | CGRYCG | 1 cut(s) | 2017 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 437, 452, 461, 467, 761, 770, 2010 |
| BstNI | CCWGG | 1 cut(s) | 1115 |
| BstNSI | RCATGY | 1 cut(s) | 882 |
| BstSCI | CCNGG | 2 cut(s) | 1113, 1976 |
| BstSFI | CTRYAG | 1 cut(s) | 711 |
| BstSNI | TACGTA | 1 cut(s) | 1699 |
| BstUI | CGCG | 1 cut(s) | 588 |
| BstV1I | GCAGC | 7 cut(s) | 320, 697, 757, 908, 918, 1946, 2042 |
| BstV2I | GAAGAC | 3 cut(s) | 1224, 1880, 1923 |
| BstX2I | RGATCY | 3 cut(s) | 339, 664, 1203 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 509, 1360, 1996 |
| BstYI | RGATCY | 3 cut(s) | 339, 664, 1203 |
| BstZI | CGGCCG | 1 cut(s) | 2014 |
| Bsu15I | ATCGAT | 1 cut(s) | 783 |
| BsuI | GTATCC | 4 cut(s) | 98, 619, 734, 1591 |
| BsuRI | GGCC | 3 cut(s) | 257, 455, 2016 |
| BsuTUI | ATCGAT | 1 cut(s) | 783 |
| BtgI | CCRYGG | 3 cut(s) | 1271, 1353, 2059 |
| BtsCI | GGATG | 6 cut(s) | 384, 697, 1200, 1555, 1813, 1889 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 8 cut(s) | 162, 195, 453, 543, 545, 1813, 1859, 2067 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 453, 766, 1742 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1747 |
| CfoI | GCGC | 3 cut(s) | 574, 770, 846 |
| Cfr13I | GGNCC | 4 cut(s) | 12, 454, 1329, 1363 |
| ClaI | ATCGAT | 1 cut(s) | 783 |
| CseI | GACGC | 1 cut(s) | 959 |
| DdeI | CTNAG | 5 cut(s) | 198, 270, 441, 774, 1521 |
| DraIII | CACNNNGTG | 1 cut(s) | 1524 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2006 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2006 |
| EaeI | YGGCCR | 1 cut(s) | 2014 |
| EagI | CGGCCG | 1 cut(s) | 2014 |
| Eam1104I | CTCTTC | 1 cut(s) | 1494 |
| EarI | CTCTTC | 1 cut(s) | 1494 |
| EclXI | CGGCCG | 1 cut(s) | 2014 |
| Eco105I | TACGTA | 1 cut(s) | 1699 |
| Eco130I | CCWWGG | 3 cut(s) | 1271, 1353, 1786 |
| Eco31I | GGTCTC | 1 cut(s) | 194 |
| Eco32I | GATATC | 1 cut(s) | 1435 |
| Eco47I | GGWCC | 3 cut(s) | 12, 1329, 1363 |
| Eco52I | CGGCCG | 1 cut(s) | 2014 |
| Eco57I | CTGAAG | 2 cut(s) | 269, 569 |
| Eco88I | CYCGRG | 1 cut(s) | 1316 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1319 |
| EcoO109I | RGGNCCY | 1 cut(s) | 12 |
| EcoRII | CCWGG | 1 cut(s) | 1113 |
| EcoRV | GATATC | 1 cut(s) | 1435 |
| EcoT14I | CCWWGG | 3 cut(s) | 1271, 1353, 1786 |
| EcoT22I | ATGCAT | 1 cut(s) | 433 |
| ErhI | CCWWGG | 3 cut(s) | 1271, 1353, 1786 |
| Esp3I | CGTCTC | 1 cut(s) | 620 |
| FbaI | TGATCA | 1 cut(s) | 1945 |
| Fnu4HI | GCNGC | 9 cut(s) | 334, 462, 711, 771, 922, 932, 1960, 2014, 2056 |
| FokI | GGATG | 6 cut(s) | 371, 704, 1207, 1562, 1800, 1876 |
| Fsp4HI | GCNGC | 9 cut(s) | 334, 462, 711, 771, 922, 932, 1960, 2014, 2056 |
| FspBI | CTAG | 3 cut(s) | 458, 792, 1496 |
| GlaI | GCGC | 3 cut(s) | 573, 769, 845 |
| GluI | GCNGC | 9 cut(s) | 334, 462, 711, 771, 922, 932, 1960, 2014, 2056 |
| GsaI | CCCAGC | 1 cut(s) | 505 |
| GsuI | CTGGAG | 1 cut(s) | 1136 |
| HaeII | RGCGCY | 1 cut(s) | 575 |
| HaeIII | GGCC | 3 cut(s) | 257, 455, 2016 |
| HapII | CCGG | 3 cut(s) | 152, 1408, 1977 |
| HgaI | GACGC | 1 cut(s) | 959 |
| HhaI | GCGC | 3 cut(s) | 574, 770, 846 |
| Hin1I | GRCGYC | 1 cut(s) | 951 |
| Hin6I | GCGC | 3 cut(s) | 572, 768, 844 |
| HinP1I | GCGC | 3 cut(s) | 572, 768, 844 |
| HincII | GTYRAC | 2 cut(s) | 108, 1689 |
| HindII | GTYRAC | 2 cut(s) | 108, 1689 |
| HindIII | AAGCTT | 2 cut(s) | 295, 416 |
| HpaII | CCGG | 3 cut(s) | 152, 1408, 1977 |
| HphI | GGTGA | 2 cut(s) | 383, 1369 |
| Hpy166II | GTNNAC | 4 cut(s) | 96, 108, 949, 1689 |
| Hpy188I | TCNGA | 4 cut(s) | 271, 1060, 1144, 1149 |
| Hpy188III | TCNNGA | 4 cut(s) | 124, 152, 727, 1408 |
| Hpy8I | GTNNAC | 4 cut(s) | 96, 108, 949, 1689 |
| Hpy99I | CGWCG | 2 cut(s) | 566, 1136 |
| HpyAV | CCTTC | 1 cut(s) | 244 |
| HpyCH4III | ACNGT | 5 cut(s) | 683, 1723, 1749, 1854, 2063 |
| HpyCH4IV | ACGT | 5 cut(s) | 564, 701, 1449, 1698, 1882 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 437, 452, 461, 467, 761, 770, 2010 |
| HpyF3I | CTNAG | 5 cut(s) | 198, 270, 441, 774, 1521 |
| HpySE526I | ACGT | 5 cut(s) | 564, 701, 1449, 1698, 1882 |
| Hsp92I | GRCGYC | 1 cut(s) | 951 |
| HspAI | GCGC | 3 cut(s) | 572, 768, 844 |
| Kpn2I | TCCGGA | 2 cut(s) | 151, 1407 |
| Ksp22I | TGATCA | 1 cut(s) | 1945 |
| LmnI | GCTCC | 3 cut(s) | 268, 1506, 1680 |
| Lsp1109I | GCAGC | 7 cut(s) | 320, 697, 757, 908, 918, 1946, 2042 |
| LweI | GCATC | 3 cut(s) | 682, 795, 1257 |
| MaeI | CTAG | 3 cut(s) | 458, 792, 1496 |
| MaeII | ACGT | 5 cut(s) | 564, 701, 1449, 1698, 1882 |
| MaeIII | GTNAC | 5 cut(s) | 518, 538, 637, 1629, 1848 |
| MfeI | CAATTG | 1 cut(s) | 756 |
| MflI | RGATCY | 3 cut(s) | 339, 664, 1203 |
| MluCI | AATT | 9 cut(s) | 378, 756, 1167, 1382, 1424, 1824, 1903, 1938, 1964 |
| MlyI | GAGTC | 4 cut(s) | 634, 1472, 1562, 1877 |
| Mph1103I | ATGCAT | 1 cut(s) | 433 |
| MroI | TCCGGA | 2 cut(s) | 151, 1407 |
| MseI | TTAA | 9 cut(s) | 188, 321, 420, 567, 861, 966, 984, 1053, 1563 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1031, 1358 |
| MspCI | CTTAAG | 2 cut(s) | 320, 965 |
| MspI | CCGG | 3 cut(s) | 152, 1408, 1977 |
| MspR9I | CCNGG | 2 cut(s) | 1115, 1978 |
| MunI | CAATTG | 1 cut(s) | 756 |
| Mva1269I | GAATGC | 2 cut(s) | 145, 315 |
| MvaI | CCWGG | 1 cut(s) | 1115 |
| MvnI | CGCG | 1 cut(s) | 588 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 437, 452, 461, 467, 761, 770, 2010 |
| NciI | CCSGG | 1 cut(s) | 1978 |
| NcoI | CCATGG | 2 cut(s) | 1271, 1353 |
| NlaIV | GGNNCC | 5 cut(s) | 14, 494, 1205, 1365, 2065 |
| NmuCI | GTSAC | 3 cut(s) | 538, 637, 1848 |
| NsiI | ATGCAT | 1 cut(s) | 433 |
| NspI | RCATGY | 1 cut(s) | 882 |
| PaeR7I | CTCGAG | 1 cut(s) | 1316 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 120, 649, 819, 1140 |
| PctI | GAATGC | 2 cut(s) | 145, 315 |
| PfeI | GAWTC | 6 cut(s) | 101, 227, 533, 610, 994, 1981 |
| PfoI | TCCNGGA | 1 cut(s) | 1976 |
| PkrI | GCNGC | 9 cut(s) | 335, 463, 712, 772, 923, 933, 1961, 2015, 2057 |
| PleI | GAGTC | 4 cut(s) | 634, 1471, 1561, 1876 |
| PpsI | GAGTC | 4 cut(s) | 634, 1471, 1561, 1876 |
| Ppu21I | YACGTR | 2 cut(s) | 1699, 1883 |
| PpuMI | RGGWCCY | 1 cut(s) | 12 |
| PsiI | TTATAA | 1 cut(s) | 1802 |
| Psp1406I | AACGTT | 2 cut(s) | 701, 1449 |
| Psp5II | RGGWCCY | 1 cut(s) | 12 |
| Psp6I | CCWGG | 1 cut(s) | 1113 |
| PspFI | CCCAGC | 1 cut(s) | 501 |
| PspGI | CCWGG | 1 cut(s) | 1113 |
| PspN4I | GGNNCC | 5 cut(s) | 14, 494, 1205, 1365, 2065 |
| PspPI | GGNCC | 4 cut(s) | 12, 454, 1329, 1363 |
| PspPPI | RGGWCCY | 1 cut(s) | 12 |
| PspXI | VCTCGAGB | 1 cut(s) | 1316 |
| PstI | CTGCAG | 1 cut(s) | 715 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1747 |
| PsuI | RGATCY | 3 cut(s) | 339, 664, 1203 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1031, 1358 |
| SaqAI | TTAA | 9 cut(s) | 188, 321, 420, 567, 861, 966, 984, 1053, 1563 |
| SatI | GCNGC | 9 cut(s) | 334, 462, 711, 771, 922, 932, 1960, 2014, 2056 |
| Sau96I | GGNCC | 4 cut(s) | 12, 454, 1329, 1363 |
| ScaI | AGTACT | 3 cut(s) | 55, 600, 1955 |
| SchI | GAGTC | 4 cut(s) | 634, 1472, 1562, 1877 |
| ScrFI | CCNGG | 2 cut(s) | 1115, 1978 |
| SfaNI | GCATC | 3 cut(s) | 682, 795, 1257 |
| SfcI | CTRYAG | 1 cut(s) | 711 |
| Sfr274I | CTCGAG | 1 cut(s) | 1316 |
| SinI | GGWCC | 3 cut(s) | 12, 1329, 1363 |
| SlaI | CTCGAG | 1 cut(s) | 1316 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1031, 1358 |
| SmlI | CTYRAG | 4 cut(s) | 320, 602, 965, 1316 |
| SmoI | CTYRAG | 4 cut(s) | 320, 602, 965, 1316 |
| SnaBI | TACGTA | 1 cut(s) | 1699 |
| SpeI | ACTAGT | 1 cut(s) | 791 |
| Sse9I | AATT | 9 cut(s) | 378, 756, 1167, 1382, 1424, 1824, 1903, 1938, 1964 |
| SsiI | CCGC | 3 cut(s) | 461, 1285, 2013 |
| SspMI | CTAG | 3 cut(s) | 458, 792, 1496 |
| StyD4I | CCNGG | 2 cut(s) | 1113, 1976 |
| StyI | CCWWGG | 3 cut(s) | 1271, 1353, 1786 |
| TaaI | ACNGT | 5 cut(s) | 683, 1723, 1749, 1854, 2063 |
| TaiI | ACGT | 5 cut(s) | 567, 704, 1452, 1701, 1885 |
| TasI | AATT | 9 cut(s) | 378, 756, 1167, 1382, 1424, 1824, 1903, 1938, 1964 |
| TatI | WGTACW | 4 cut(s) | 53, 598, 1713, 1953 |
| TauI | GCSGC | 2 cut(s) | 464, 2016 |
| TfiI | GAWTC | 6 cut(s) | 101, 227, 533, 610, 994, 1981 |
| Tru1I | TTAA | 9 cut(s) | 188, 321, 420, 567, 861, 966, 984, 1053, 1563 |
| Tru9I | TTAA | 9 cut(s) | 188, 321, 420, 567, 861, 966, 984, 1053, 1563 |
| TscAI | CASTG | 8 cut(s) | 169, 202, 453, 543, 552, 1813, 1859, 2074 |
| TseFI | GTSAC | 3 cut(s) | 538, 637, 1848 |
| TseI | GCWGC | 7 cut(s) | 333, 710, 770, 921, 931, 1959, 2055 |
| Tsp45I | GTSAC | 3 cut(s) | 538, 637, 1848 |
| TspDTI | ATGAA | 5 cut(s) | 153, 289, 1179, 1496, 2039 |
| TspGWI | ACGGA | 7 cut(s) | 39, 413, 641, 989, 1019, 1142, 1554 |
| TspRI | CASTG | 8 cut(s) | 169, 202, 453, 543, 552, 1813, 1859, 2074 |
| Vha464I | CTTAAG | 2 cut(s) | 320, 965 |
| VpaK11BI | GGWCC | 3 cut(s) | 12, 1329, 1363 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1319 |
| XapI | RAATTY | 4 cut(s) | 378, 1167, 1424, 1964 |
| XceI | RCATGY | 1 cut(s) | 882 |
| XhoI | CTCGAG | 1 cut(s) | 1316 |
| XspI | CTAG | 3 cut(s) | 458, 792, 1496 |
| ZrmI | AGTACT | 3 cut(s) | 55, 600, 1955 |
| Zsp2I | ATGCAT | 1 cut(s) | 433 |