Rw4G002380

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0008907
Physical Location & Seq
Forward (+)
4589553 .. 4591171
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002380.1

Sequence Viewer

Length: 645 bp
ATGGCAAGCAAGCTCACTGAAATGTCAGACGAAGAAATCCTGAACTTCATCAATGGAAAGTATTCTCTGGGGGACAGCACTGCCTTTGATGTTGGTGATCTTTTCACGATCACTAAGACCATCATTGATCATGCAACCCGTAATTCGATGGTCGATGATATTCTGAAGTCGGCCAATGCCCTGAATGAGAAGGTCCCCAACATCAACGACAGCTTCATCTCGCCATTGTGCACTCTTAAGTCCATTTACTGCGAGATGTCATCATGTATGGATAAGGCTTGTTCTGGTGAAGAAATTTCCATCCAACCAAGGACGGAAGTGATATTTGACAAGCTAAAACCCTATCCATGGGACGCTAAGGCAGTGCTGGCCCTAGCGGCTTTCGCTTTGGAATACGGAGACTTCTGGCACCTCGCCCAGCTCTATGGCCAATGTAACCAACTCACCAATTCACTGGCTATCCTGAAGCGAGTACCCGTCCTTACCAAGCATGCGACCTTGGAGAAACGCAAGGAGGAAGTACATGACTGGAGGCAGTCTGGAGCCTGCCCCTGGAGGTGTGGTCTTGTGCGTGCGTGCGTCTGTCAGTCTGTGAGTCTTCCTTTGGAAATTGGAATGAAATTGCTTTGCTGTTTGATACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

214

Amino Acids

23.89

Weight (kDa)

5.6

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 10 - 175 5.5e-31 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 408
AciI CCGC 1 cut(s) 377
AcoI YGGCCR 2 cut(s) 171, 427
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 185, 485
AfaI GTAC 2 cut(s) 474, 522
AfiI CCNNNNNNNGG 2 cut(s) 348, 552
AflII CTTAAG 1 cut(s) 236
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 4 cut(s) 13, 213, 334, 421
AluI AGCT 4 cut(s) 13, 213, 334, 421
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 393
Alw44I GTGCAC 1 cut(s) 229
AoxI GGCC 3 cut(s) 171, 369, 427
ApaLI GTGCAC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 193, 370
AsuHPI GGTGA 3 cut(s) 107, 299, 436
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 233
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 233
BccI CCATC 3 cut(s) 128, 142, 308
BciT130I CCWGG 1 cut(s) 553
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 1 cut(s) 374
BfrI CTTAAG 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 377
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 553
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 193, 370
BmiI GGNNCC 3 cut(s) 195, 410, 544
BmrFI CCNGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 590
BpmI CTGGAG 3 cut(s) 550, 561, 574
Bpu10I CCTNAGC 1 cut(s) 357
BsaJI CCNNGG 4 cut(s) 308, 347, 498, 551
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 552
Bse1I ACTGG 2 cut(s) 459, 533
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 4 cut(s) 308, 347, 498, 551
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 348, 552
BseNI ACTGG 2 cut(s) 459, 533
BseSI GKGCMC 1 cut(s) 233
BseYI CCCAGC 1 cut(s) 417
BshFI GGCC 3 cut(s) 173, 371, 429
BshNI GGYRCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 233
BslFI GGGAC 3 cut(s) 86, 179, 365
BslI CCNNNNNNNGG 2 cut(s) 348, 552
BsmAI GTCTC 1 cut(s) 393
BsmFI GGGAC 3 cut(s) 86, 179, 365
BsnI GGCC 3 cut(s) 173, 371, 429
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 97, 108, 127
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 1 cut(s) 377
BspANI GGCC 3 cut(s) 173, 371, 429
BspLI GGNNCC 3 cut(s) 195, 410, 544
BspT107I GGYRCC 1 cut(s) 408
BspTI CTTAAG 1 cut(s) 236
BsrI ACTGG 2 cut(s) 459, 533
BssECI CCNNGG 4 cut(s) 308, 347, 498, 551
BssMI GATC 3 cut(s) 97, 108, 127
BssT1I CCWWGG 3 cut(s) 308, 347, 498
Bst2UI CCWGG 1 cut(s) 553
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 7 cut(s) 7, 11, 369, 492, 547, 573, 577
BstDEI CTNAG 2 cut(s) 114, 357
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 300
BstKTI GATC 3 cut(s) 100, 111, 130
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 3 cut(s) 97, 108, 127
BstMWI GCNNNNNNNGC 3 cut(s) 368, 377, 383
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 590
BstXI CCANNNNNNTGG 2 cut(s) 425, 454
BsuRI GGCC 3 cut(s) 173, 371, 429
BtgI CCRYGG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 2 cut(s) 78, 369
BtsIMutI CAGTG 4 cut(s) 15, 78, 369, 452
Cac8I GCNNGC 7 cut(s) 7, 11, 369, 492, 547, 573, 577
Cfr13I GGNCC 2 cut(s) 193, 370
CseI GACGC 2 cut(s) 362, 568
Csp6I GTAC 2 cut(s) 473, 521
CviAII CATG 5 cut(s) 131, 264, 348, 491, 524
CviQI GTAC 2 cut(s) 473, 521
DdeI CTNAG 2 cut(s) 114, 357
DpnI GATC 3 cut(s) 99, 110, 129
DpnII GATC 3 cut(s) 97, 108, 127
EaeI YGGCCR 2 cut(s) 171, 427
Eco130I CCWWGG 3 cut(s) 308, 347, 498
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 185, 485
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 3 cut(s) 308, 347, 498
ErhI CCWWGG 3 cut(s) 308, 347, 498
FaeI CATG 5 cut(s) 134, 267, 351, 494, 527
FaiI YATR 7 cut(s) 132, 265, 269, 349, 426, 492, 525
FaqI GGGAC 3 cut(s) 86, 179, 365
FatI CATG 5 cut(s) 130, 263, 347, 490, 523
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 374
GluI GCNGC 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 3 cut(s) 550, 561, 574
HaeIII GGCC 3 cut(s) 173, 371, 429
HgaI GACGC 2 cut(s) 362, 568
Hin1II CATG 5 cut(s) 134, 267, 351, 494, 527
HinfI GANTC 1 cut(s) 595
HphI GGTGA 3 cut(s) 107, 299, 436
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 28, 165
Hpy188III TCNNGA 4 cut(s) 40, 106, 463, 540
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 134, 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 377, 383
HpyF3I CTNAG 2 cut(s) 114, 357
Hsp92II CATG 5 cut(s) 134, 267, 351, 494, 527
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 97, 108, 127
LmnI GCTCC 1 cut(s) 542
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 434
MalI GATC 3 cut(s) 99, 110, 129
MboI GATC 3 cut(s) 97, 108, 127
MboII GAAGA 3 cut(s) 44, 302, 590
MhlI GDGCHC 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 5 cut(s) 142, 294, 448, 609, 620
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 1 cut(s) 604
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 422, 508, 525, 549
Mox20I TGGCCA 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 61
MscI TGGCCA 1 cut(s) 429
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 429
MspCI CTTAAG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 553
MvaI CCWGG 1 cut(s) 553
MwoI GCNNNNNNNGC 3 cut(s) 368, 377, 383
NcoI CCATGG 1 cut(s) 347
NdeII GATC 3 cut(s) 97, 108, 127
NlaIII CATG 5 cut(s) 134, 267, 351, 494, 527
NlaIV GGNNCC 3 cut(s) 195, 410, 544
NspI RCATGY 1 cut(s) 494
PaeI GCATGC 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 3 cut(s) 195, 410, 544
PspPI GGNCC 2 cut(s) 193, 370
PspPPI RGGWCCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 474, 522
RsaNI GTAC 2 cut(s) 473, 521
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 97, 108, 127
Sau96I GGNCC 2 cut(s) 193, 370
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 1 cut(s) 233
SetI ASST 8 cut(s) 15, 195, 215, 336, 414, 423, 500, 560
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SphI GCATGC 1 cut(s) 494
Sse9I AATT 5 cut(s) 142, 294, 448, 609, 620
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 3 cut(s) 308, 347, 498
TaqI TCGA 2 cut(s) 146, 153
TasI AATT 5 cut(s) 142, 294, 448, 609, 620
TatI WGTACW 1 cut(s) 520
TauI GCSGC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 4 cut(s) 22, 85, 369, 459
TspDTI ATGAA 3 cut(s) 37, 205, 632
TspGWI ACGGA 2 cut(s) 329, 411
TspRI CASTG 4 cut(s) 22, 85, 369, 459
Vha464I CTTAAG 1 cut(s) 236
VneI GTGCAC 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 294
XceI RCATGY 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.