Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008907

Physical Location & Seq

Genomic Coordinates Forward (+)

4490376 .. 4493326

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G002340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGTCCGACGAAGAAATCCTGAACTTCATCAATGGAAAGTATTCTCCGGGGGACAGCACTGCCTTTGATGTTGGTGATCTTTTCACGATCACTAAGACCATCATTGATCATGCAACCCGTAATTCGATGGTCGATGATATTCTGAAGTCGGCCAATGCCCTGAATGAGAAGGTCCCCAACATCAGCGACAGCTTCATCTCGCCATTGTGCACTCTTAAGTCCATTTGCTGCGAGATGTCATCATGGAGAAGCCATACCCTCTATAGTCTATCCTATCTTGTTACTAAAATCGAGGGCATAATGAAGATCCTTGAGAAACAGCATGCAAGTTGCGAAAAAGAACAAGATAAATTAAAGAAGCACAGGAAGTTGGTCAGGATAATGTCGGAGGCCCGAAGCACTCATCAGATCATGAACGTTATTAACACCCTGATTCAGTTCAGGGATGATGGGAAGCTACCCACCATTAGTGTCGGTAGCAGTGTCAAGGAGGTTAAGTCTGAAATATTTGTCGAAGAAATAAAGGAAAATTATGTGCTGTTTTACATTTCAAGTTTGGAGAACAATAAGAAGGATGACATTTCACATCTGAAAGAAGTTCATGATGAATTTCCTAAAAAGTATCAAAATTGGACGAATGTGTGGATCCCTATTGTGGAAGATTGGACGGAAGACCATAGAAAAAAGTTTGAGGAGTTGGCATCGGAGATGCCATGGTACAAGGTCCAGTTTTTTTCTTCAATAGTGATCAAGTTCCTCAGCGCGGACGACAGGTTGTCCTTCAAGGGTAATCCGAAGTGCGTGGTGATGAGCCCCCAAGCGCAACTGCAAAACCACAATACACTCGCCTTGATCCGGAAATATGGAATCAATTTCTTTGATCATTTGTTTCCAGTGGTGGTCCCTCCAGGCCCTCTACCGTTGGTCCCTCCAGAGGACCCCCGCTTAGAACTAAAGCCATTTTTTGAGAGTTTGAAGAACGAAGAACTCAAAAATTCGAGAAAAGATAAAAATAAGTGCATTTTCTTCTTTGGAGGCACAGATGAGTTGTGGATCAAGTTGAAAAAGAATGTGAAGGAAGTAAACGATACCATCAAGGAATTCGGGGTGGCGATTGAGTTAAGTAGAGTGGAGTTACACGAAGAAGAGCCAGGAGAGGAATCAAAATACTCGGAAACTCATGAGGCCTTTTGGTCGGGGATAGAGAACTTATTATTGTCCTTGCTTGATCACTACAACGAAGTGAAGTACAAGATCGTGAAAGACGAACTTCACAAGCTACTGTCCTACAAACATGGGGAATGGATTATGTGGAAGCCATCTATTTCATTATTGGGAAGCTATATCCAAAAATTTATAGCCAATAAGCCGTGGTCACCTCCTTCCGAATGCTGCCAATTTGTCAATCCCGGAAATCCTCCCAAGATCATGGACTGCCCATTCTGCCGCCATCCCATGGAAACCATCTCTGTCGCCTACAAGTGCTGCCACCCTGGATATCCCCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

503

Amino Acids

58.23

Weight (kDa)

6.25

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008907)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0389961 RchiOBHm_Chr4g0400271 RchiOBHm_Chr4g0400571
rosa_laevigata	RLG00000009943
rosa_multiflora	Rmu_sc0003687.1_g000008 Rmu_sc0004336.1_g000023 Rmu_sc0005451.1_g000008 Rmu_ssc0000245.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336110 Rroxscaffold_5G00345410
rosa_rugosa	Rorug03G0327600 Rorug04G0024500
rosa_samantha	Rh4AG030800 Rh4AG102000 Rh4BG024200 Rh4BG097700 Rh4CG033300 Rh4CG110100 Rh4DG024300
rosa_wichuraiana	Rw4G002340 Rw4G002380 Rw4G008280 Rw4G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1456
AccII	CGCG	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	855
AciI	CCGC	3 cut(s)	764, 943, 1447
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	5 cut(s)	301, 640, 653, 847, 1061
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	608, 994, 1100, 1352
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	2 cut(s)	719, 1250
AfiI	CCNNNNNNNGG	5 cut(s)	655, 763, 855, 934, 1456
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	5 cut(s)	552, 741, 784, 976, 1063
AhdI	GACNNNNNGTC	1 cut(s)	775
AjnI	CCWGG	3 cut(s)	907, 1150, 1492
AluBI	AGCT	4 cut(s)	192, 457, 1279, 1341
AluI	AGCT	4 cut(s)	192, 457, 1279, 1341
Alw21I	GWGCWC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	208
AlwI	GGATC	5 cut(s)	301, 640, 653, 847, 1061
Aor13HI	TCCGGA	1 cut(s)	855
AoxI	GGCC	4 cut(s)	150, 390, 910, 1185
ApaLI	GTGCAC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	228, 1392, 1485
ApoI	RAATTY	4 cut(s)	608, 994, 1100, 1352
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	764, 823
AspS9I	GGNCC	7 cut(s)	172, 391, 724, 901, 911, 925, 937
AsuC2I	CCSGG	2 cut(s)	48, 1410
AsuHPI	GGTGA	3 cut(s)	86, 817, 1368
AvaII	GGWCC	5 cut(s)	172, 724, 901, 925, 937
BaeGI	GKGCMC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	815
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	758
BbvI	GCAGC	3 cut(s)	215, 1379, 1472
BccI	CCATC	7 cut(s)	107, 121, 443, 1100, 1327, 1458, 1472
BceAI	ACGGC	1 cut(s)	1354
BciT130I	CCWGG	3 cut(s)	909, 1152, 1494
BclI	TGATCA	4 cut(s)	106, 747, 880, 1228
BcnI	CCSGG	2 cut(s)	48, 1410
BfaI	CTAG	1 cut(s)	1510
BfmI	CTRYAG	1 cut(s)	262
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	4 cut(s)	229, 1393, 1447, 1486
BlsI	GCNGC	4 cut(s)	230, 1394, 1448, 1487
Bme1390I	CCNGG	5 cut(s)	48, 909, 1152, 1410, 1494
Bme18I	GGWCC	5 cut(s)	172, 724, 901, 925, 937
BmeRI	GACNNNNNGTC	1 cut(s)	775
BmgT120I	GGNCC	7 cut(s)	172, 391, 724, 901, 911, 925, 937
BmiI	GGNNCC	5 cut(s)	174, 647, 903, 927, 939
BmrFI	CCNGG	5 cut(s)	48, 909, 1152, 1410, 1494
BmsI	GCATC	2 cut(s)	699, 710
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	2 cut(s)	891, 915
Bpu10I	CCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	48, 1410
BsaJI	CCNNGG	5 cut(s)	47, 713, 1370, 1455, 1492
BsaWI	WCCGGW	1 cut(s)	855
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	5 cut(s)	655, 763, 855, 934, 1456
Bse1I	ACTGG	2 cut(s)	727, 893
BseAI	TCCGGA	1 cut(s)	855
BseBI	CCWGG	3 cut(s)	909, 1152, 1494
BseDI	CCNNGG	5 cut(s)	47, 713, 1370, 1455, 1492
BseGI	GGATG	3 cut(s)	451, 580, 1450
BseLI	CCNNNNNNNGG	5 cut(s)	655, 763, 855, 934, 1456
BseMII	CTCAG	1 cut(s)	772
BseNI	ACTGG	2 cut(s)	727, 893
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	215, 1379, 1472
Bsh1236I	CGCG	1 cut(s)	764
BshFI	GGCC	4 cut(s)	152, 392, 912, 1187
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	47, 856, 1410
BslFI	GGGAC	4 cut(s)	65, 158, 887, 911
BslI	CCNNNNNNNGG	5 cut(s)	655, 763, 855, 934, 1456
BsmFI	GGGAC	4 cut(s)	65, 158, 887, 911
BsmI	GAATGC	1 cut(s)	1394
BsnI	GGCC	4 cut(s)	152, 392, 912, 1187
Bsp1286I	GDGCHC	2 cut(s)	212, 815
Bsp13I	TCCGGA	1 cut(s)	855
Bsp19I	CCATGG	2 cut(s)	713, 1455
BspACI	CCGC	3 cut(s)	764, 943, 1447
BspANI	GGCC	4 cut(s)	152, 392, 912, 1187
BspCNI	CTCAG	1 cut(s)	771
BspEI	TCCGGA	1 cut(s)	855
BspFNI	CGCG	1 cut(s)	764
BspHI	TCATGA	3 cut(s)	411, 601, 1180
BspLI	GGNNCC	5 cut(s)	174, 647, 903, 927, 939
BspPI	GGATC	5 cut(s)	301, 640, 653, 847, 1061
BspQI	GCTCTTC	1 cut(s)	1140
BspTI	CTTAAG	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	727, 893
BssECI	CCNNGG	5 cut(s)	47, 713, 1370, 1455, 1492
BssT1I	CCWWGG	2 cut(s)	713, 1455
Bst2UI	CCWGG	3 cut(s)	909, 1152, 1494
Bst4CI	ACNGT	2 cut(s)	921, 1284
Bst6I	CTCTTC	1 cut(s)	1140
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	93, 758, 946
BstDSI	CCRYGG	3 cut(s)	713, 1370, 1455
BstEII	GGTNACC	1 cut(s)	1374
BstF5I	GGATG	3 cut(s)	451, 580, 1450
BstFNI	CGCG	1 cut(s)	764
BstHHI	GCGC	2 cut(s)	764, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	1443
BstNI	CCWGG	3 cut(s)	909, 1152, 1494
BstNSI	RCATGY	1 cut(s)	326
BstPI	GGTNACC	1 cut(s)	1374
BstSCI	CCNGG	5 cut(s)	46, 907, 1150, 1408, 1492
BstSFI	CTRYAG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	3 cut(s)	215, 1379, 1472
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	2 cut(s)	306, 645
BstXI	CCANNNNNNTGG	1 cut(s)	1429
BstYI	RGATCY	2 cut(s)	306, 645
BsuRI	GGCC	4 cut(s)	152, 392, 912, 1187
BtgI	CCRYGG	3 cut(s)	713, 1370, 1455
BtsCI	GGATG	3 cut(s)	451, 580, 1450
BtsI	GCAGTG	2 cut(s)	57, 487
BtsIMutI	CAGTG	3 cut(s)	57, 487, 900
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	3 cut(s)	411, 601, 1180
CfoI	GCGC	2 cut(s)	764, 823
Cfr13I	GGNCC	7 cut(s)	172, 391, 724, 901, 911, 925, 937
Csp6I	GTAC	2 cut(s)	718, 1249
CviQI	GTAC	2 cut(s)	718, 1249
DdeI	CTNAG	3 cut(s)	93, 758, 946
DriI	GACNNNNNGTC	1 cut(s)	775
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	1140
Eam1105I	GACNNNNNGTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	1140
Eco130I	CCWWGG	2 cut(s)	713, 1455
Eco147I	AGGCCT	1 cut(s)	1187
Eco24I	GRGCYC	1 cut(s)	815
Eco32I	GATATC	1 cut(s)	1499
Eco47I	GGWCC	5 cut(s)	172, 724, 901, 925, 937
Eco57I	CTGAAG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	1374
EcoO109I	RGGNCCY	3 cut(s)	172, 911, 937
EcoO65I	GGTNACC	1 cut(s)	1374
EcoRI	GAATTC	1 cut(s)	1100
EcoRII	CCWGG	3 cut(s)	907, 1150, 1492
EcoRV	GATATC	1 cut(s)	1499
EcoT14I	CCWWGG	2 cut(s)	713, 1455
EcoT38I	GRGCYC	1 cut(s)	815
ErhI	CCWWGG	2 cut(s)	713, 1455
FalI	AAGNNNNNCTT	2 cut(s)	1254, 1286
FaqI	GGGAC	4 cut(s)	65, 158, 887, 911
FauI	CCCGC	1 cut(s)	950
FbaI	TGATCA	4 cut(s)	106, 747, 880, 1228
Fnu4HI	GCNGC	4 cut(s)	229, 1393, 1447, 1486
FokI	GGATG	3 cut(s)	458, 587, 1437
FriOI	GRGCYC	1 cut(s)	815
Fsp4HI	GCNGC	4 cut(s)	229, 1393, 1447, 1486
FspBI	CTAG	1 cut(s)	1510
GlaI	GCGC	2 cut(s)	763, 822
GluI	GCNGC	4 cut(s)	229, 1393, 1447, 1486
GsuI	CTGGAG	2 cut(s)	891, 915
HaeIII	GGCC	4 cut(s)	152, 392, 912, 1187
HapII	CCGG	3 cut(s)	47, 856, 1410
HhaI	GCGC	2 cut(s)	764, 823
Hin6I	GCGC	2 cut(s)	762, 821
HinP1I	GCGC	2 cut(s)	762, 821
HinfI	GANTC	3 cut(s)	433, 867, 1160
HpaII	CCGG	3 cut(s)	47, 856, 1410
HphI	GGTGA	3 cut(s)	86, 817, 1368
Hpy166II	GTNNAC	2 cut(s)	210, 1084
Hpy8I	GTNNAC	2 cut(s)	210, 1084
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	5 cut(s)	163, 565, 790, 1069, 1392
HpyCH4III	ACNGT	2 cut(s)	921, 1284
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	113, 210, 326, 829, 1020
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1443
HpyF3I	CTNAG	3 cut(s)	93, 758, 946
HpySE526I	ACGT	1 cut(s)	417
HspAI	GCGC	2 cut(s)	762, 821
Kpn2I	TCCGGA	1 cut(s)	855
Ksp22I	TGATCA	4 cut(s)	106, 747, 880, 1228
LguI	GCTCTTC	1 cut(s)	1140
Lsp1109I	GCAGC	3 cut(s)	215, 1379, 1472
LweI	GCATC	2 cut(s)	699, 710
MaeI	CTAG	1 cut(s)	1510
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	280, 1134, 1374
MflI	RGATCY	2 cut(s)	306, 645
MhlI	GDGCHC	2 cut(s)	212, 815
MmeI	TCCRAC	2 cut(s)	30, 366
MroI	TCCGGA	1 cut(s)	855
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	5 cut(s)	216, 353, 423, 495, 1121
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	3 cut(s)	47, 856, 1410
MspR9I	CCNGG	5 cut(s)	48, 909, 1152, 1410, 1494
Mva1269I	GAATGC	1 cut(s)	1394
MvaI	CCWGG	3 cut(s)	909, 1152, 1494
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	1 cut(s)	1443
NciI	CCSGG	2 cut(s)	48, 1410
NcoI	CCATGG	2 cut(s)	713, 1455
NlaIV	GGNNCC	5 cut(s)	174, 647, 903, 927, 939
NmuCI	GTSAC	1 cut(s)	1374
NspI	RCATGY	1 cut(s)	326
PaeI	GCATGC	1 cut(s)	326
PagI	TCATGA	3 cut(s)	411, 601, 1180
PceI	AGGCCT	1 cut(s)	1187
PciSI	GCTCTTC	1 cut(s)	1140
PcsI	WCGNNNNNNNCGW	1 cut(s)	1263
PctI	GAATGC	1 cut(s)	1394
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	433, 867, 1160
PflMI	CCANNNNNTGG	1 cut(s)	1456
PfoI	TCCNGGA	1 cut(s)	1408
PkrI	GCNGC	4 cut(s)	230, 1394, 1448, 1487
PpuMI	RGGWCCY	2 cut(s)	172, 937
Psp1406I	AACGTT	1 cut(s)	417
Psp5II	RGGWCCY	2 cut(s)	172, 937
Psp6I	CCWGG	3 cut(s)	907, 1150, 1492
PspEI	GGTNACC	1 cut(s)	1374
PspGI	CCWGG	3 cut(s)	907, 1150, 1492
PspN4I	GGNNCC	5 cut(s)	174, 647, 903, 927, 939
PspPI	GGNCC	7 cut(s)	172, 391, 724, 901, 911, 925, 937
PspPPI	RGGWCCY	2 cut(s)	172, 937
PsuI	RGATCY	2 cut(s)	306, 645
RsaI	GTAC	2 cut(s)	719, 1250
RsaNI	GTAC	2 cut(s)	718, 1249
SapI	GCTCTTC	1 cut(s)	1140
SaqAI	TTAA	5 cut(s)	216, 353, 423, 495, 1121
SatI	GCNGC	4 cut(s)	229, 1393, 1447, 1486
Sau96I	GGNCC	7 cut(s)	172, 391, 724, 901, 911, 925, 937
ScrFI	CCNGG	5 cut(s)	48, 909, 1152, 1410, 1494
SduI	GDGCHC	2 cut(s)	212, 815
SfaNI	GCATC	2 cut(s)	699, 710
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	5 cut(s)	172, 724, 901, 925, 937
SmlI	CTYRAG	2 cut(s)	215, 311
SmoI	CTYRAG	2 cut(s)	215, 311
SphI	GCATGC	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	1187
SsiI	CCGC	3 cut(s)	764, 943, 1447
SspI	AATATT	1 cut(s)	507
SspMI	CTAG	1 cut(s)	1510
StuI	AGGCCT	1 cut(s)	1187
StyD4I	CCNGG	5 cut(s)	46, 907, 1150, 1408, 1492
StyI	CCWWGG	2 cut(s)	713, 1455
TaaI	ACNGT	2 cut(s)	921, 1284
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	5 cut(s)	125, 132, 291, 513, 998
TatI	WGTACW	1 cut(s)	1248
TauI	GCSGC	1 cut(s)	1449
TfiI	GAWTC	3 cut(s)	433, 867, 1160
Tru1I	TTAA	5 cut(s)	216, 353, 423, 495, 1121
Tru9I	TTAA	5 cut(s)	216, 353, 423, 495, 1121
TscAI	CASTG	3 cut(s)	64, 487, 900
TseFI	GTSAC	1 cut(s)	1374
TseI	GCWGC	3 cut(s)	228, 1392, 1485
Tsp45I	GTSAC	1 cut(s)	1374
TspDTI	ATGAA	7 cut(s)	16, 184, 317, 428, 590, 621, 1317
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	3 cut(s)	64, 487, 900
Van91I	CCANNNNNTGG	1 cut(s)	1456
Vha464I	CTTAAG	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	208
VpaK11BI	GGWCC	5 cut(s)	172, 724, 901, 925, 937
XapI	RAATTY	4 cut(s)	608, 994, 1100, 1352
XceI	RCATGY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	1 cut(s)	1510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.