Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008907

Physical Location & Seq

Genomic Coordinates Forward (+)

3437004 .. 3437717

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0024500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCATCGGCAGAAACGGTAGCAAATATCGAAGAACTCCCGACAAATATCCTTGTGTCGGTGCCACCTCATTCTGTTGCCCGTTTCATGTGCGTCTCCAAACATTGGCTCTCTCTTATCTCCAACATCCAAAATCCCAAGATTTCTGCTTTCTTCTCCAGCAAGACCAAAGAAGAGTCCTTCAAGTTCATTCCTCTTCGTAAGCACGAAAGCCCATCTGTGAATCCCTTTAAAAGCCTTAATAATTCCGTCCCTGATGGATCTAAGTTGAAGATTATTCAGTCCTGCAATAGCCTCTTTCTCTGCCTTTGCAAGTCGACGAAAGAAAGAAGACATGATCTCGTATACGTTTTCAATCCCACAACCAACCAATTCCGGGCTGTTTCTTCTCCAAGGTTTGGGGAAGACATGGGCGAATTTGCTTTTGTACGTTACGAATTTGGTTTTGTACGTTATGCTTTGGCTTTTGATCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCGTGACTAACTTCAATGATCATTATGATGGTGGGCACCACGAGATAGACATATATTCATCAGAGACTGGAAAGTGGAAGCATCTCGATACTCCTTTCTTCCCCAGCCCTCTGACGAGGGCGCAAACCATGATTGCAAGGAGATGGCCATGCACTTTGACTACAGGAGCAGGAAAGGCACCGTATACTGCAATGGCGCAGTTCATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SEO_C SEO_N

Protein Analysis

237

Amino Acids

26.81

Weight (kDa)

9.11

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	57 - 207	6.3e-07	F-box associated beta propeller domain
FBA_1	PF07734	63 - 198	1.1e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008907)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0389961 RchiOBHm_Chr4g0400271 RchiOBHm_Chr4g0400571
rosa_laevigata	RLG00000009943
rosa_multiflora	Rmu_sc0003687.1_g000008 Rmu_sc0004336.1_g000023 Rmu_sc0005451.1_g000008 Rmu_ssc0000245.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336110 Rroxscaffold_5G00345410
rosa_rugosa	Rorug03G0327600 Rorug04G0024500
rosa_samantha	Rh4AG030800 Rh4AG102000 Rh4BG024200 Rh4BG097700 Rh4CG033300 Rh4CG110100 Rh4DG024300
rosa_wichuraiana	Rw4G002340 Rw4G002380 Rw4G008280 Rw4G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	61, 537, 679
AccB7I	CCANNNNNTGG	2 cut(s)	105, 398
AccI	GTMKAC	3 cut(s)	317, 345, 686
AclWI	GGATC	2 cut(s)	268, 464
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	2 cut(s)	416, 437
AfaI	GTAC	2 cut(s)	429, 450
AfiI	CCNNNNNNNGG	4 cut(s)	58, 105, 376, 398
AgsI	TTSAA	4 cut(s)	184, 271, 355, 517
Alw26I	GTCTC	2 cut(s)	100, 560
AlwI	GGATC	2 cut(s)	268, 464
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	647
ApoI	RAATTY	2 cut(s)	416, 437
AspLEI	GCGC	2 cut(s)	625, 700
AsuC2I	CCSGG	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	649
BanI	GGYRCC	3 cut(s)	61, 537, 679
BauI	CACGAG	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	337, 411
BccI	CCATC	4 cut(s)	223, 251, 524, 639
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	100, 560
BfmI	CTRYAG	1 cut(s)	663
Bme1390I	CCNGG	1 cut(s)	377
BmiI	GGNNCC	3 cut(s)	63, 539, 681
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	2 cut(s)	337, 411
BpmI	CTGGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 105, 376, 398
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	58, 105, 376, 398
BseMI	GCAATG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	574
BseSI	GKGCMC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	605
BshFI	GGCC	1 cut(s)	649
BshNI	GGYRCC	3 cut(s)	61, 537, 679
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	4 cut(s)	58, 105, 376, 398
BsmAI	GTCTC	2 cut(s)	100, 560
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	4 cut(s)	260, 337, 469, 520
BspANI	GGCC	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	63, 539, 681
BspPI	GGATC	2 cut(s)	268, 464
BspT107I	GGYRCC	3 cut(s)	61, 537, 679
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	4 cut(s)	260, 337, 469, 520
BssNAI	GTATAC	2 cut(s)	346, 687
BssSI	CACGAG	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	392
Bst1107I	GTATAC	2 cut(s)	346, 687
Bst2BI	CACGAG	1 cut(s)	542
Bst4CI	ACNGT	2 cut(s)	19, 684
Bst6I	CTCTTC	2 cut(s)	168, 201
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	625, 700
BstKTI	GATC	4 cut(s)	263, 340, 472, 523
BstMAI	GTCTC	2 cut(s)	100, 560
BstMBI	GATC	4 cut(s)	260, 337, 469, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	540
BstV2I	GAAGAC	2 cut(s)	337, 411
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZ17I	GTATAC	2 cut(s)	346, 687
BsuRI	GGCC	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	2 cut(s)	625, 700
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	428, 449
CviAII	CATG	5 cut(s)	88, 335, 409, 631, 651
CviJI	RGCY	8 cut(s)	109, 213, 237, 294, 380, 464, 609, 649
CviKI_1	RGCY	8 cut(s)	109, 213, 237, 294, 380, 464, 609, 649
CviQI	GTAC	2 cut(s)	428, 449
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	4 cut(s)	262, 339, 471, 522
DpnII	GATC	4 cut(s)	260, 337, 469, 520
DraI	TTTAAA	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	647
Eam1104I	CTCTTC	2 cut(s)	168, 201
EarI	CTCTTC	2 cut(s)	168, 201
Eco130I	CCWWGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	5 cut(s)	91, 338, 412, 634, 654
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	5 cut(s)	87, 334, 408, 630, 650
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	3 cut(s)	317, 345, 686
FokI	GGATG	1 cut(s)	113
GlaI	GCGC	2 cut(s)	624, 699
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	625, 700
Hin1II	CATG	5 cut(s)	91, 338, 412, 634, 654
Hin6I	GCGC	2 cut(s)	623, 698
HinP1I	GCGC	2 cut(s)	623, 698
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	2 cut(s)	176, 223
HpaII	CCGG	1 cut(s)	376
Hpy166II	GTNNAC	3 cut(s)	318, 346, 687
Hpy188I	TCNGA	2 cut(s)	565, 615
Hpy188III	TCNNGA	2 cut(s)	40, 587
Hpy8I	GTNNAC	3 cut(s)	318, 346, 687
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	190, 483
HpyCH4III	ACNGT	2 cut(s)	19, 684
HpyCH4IV	ACGT	3 cut(s)	348, 430, 451
HpyCH4V	TGCA	5 cut(s)	288, 312, 638, 654, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	3 cut(s)	348, 430, 451
Hsp92II	CATG	5 cut(s)	91, 338, 412, 634, 654
HspAI	GCGC	2 cut(s)	623, 698
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	260, 337, 469, 520
LmnI	GCTCC	1 cut(s)	668
LpnPI	CCDG	8 cut(s)	172, 267, 298, 389, 555, 619, 651, 657
LweI	GCATC	1 cut(s)	592
MaeII	ACGT	3 cut(s)	348, 430, 451
MaeIII	GTNAC	2 cut(s)	431, 505
MalI	GATC	4 cut(s)	262, 339, 471, 522
MboI	GATC	4 cut(s)	260, 337, 469, 520
MboII	GAAGA	9 cut(s)	44, 145, 185, 188, 283, 342, 378, 416, 592
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	540
MlsI	TGGCCA	1 cut(s)	649
MluCI	AATT	4 cut(s)	244, 371, 416, 437
MluNI	TGGCCA	1 cut(s)	649
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	78, 204, 305, 495, 612, 621
Mox20I	TGGCCA	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	649
MseI	TTAA	2 cut(s)	231, 240
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	649
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	677
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	4 cut(s)	260, 337, 469, 520
NlaIII	CATG	5 cut(s)	91, 338, 412, 634, 654
NlaIV	GGNNCC	3 cut(s)	63, 539, 681
NmuCI	GTSAC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	223
PflMI	CCANNNNNTGG	2 cut(s)	105, 398
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	605
PspN4I	GGNNCC	3 cut(s)	63, 539, 681
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	2 cut(s)	429, 450
RsaNI	GTAC	2 cut(s)	428, 449
RseI	CAYNNNNRTG	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	231, 240
Sau3AI	GATC	4 cut(s)	260, 337, 469, 520
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	6 cut(s)	70, 351, 398, 433, 454, 498
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	4 cut(s)	244, 371, 416, 437
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	19, 684
TaiI	ACGT	3 cut(s)	351, 433, 454
TaqI	TCGA	3 cut(s)	30, 317, 588
TasI	AATT	4 cut(s)	244, 371, 416, 437
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	231, 240
Tru9I	TTAA	2 cut(s)	231, 240
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	4 cut(s)	76, 178, 549, 694
TspGWI	ACGGA	1 cut(s)	238
Van91I	CCANNNNNTGG	2 cut(s)	105, 398
XapI	RAATTY	2 cut(s)	416, 437
XmiI	GTMKAC	3 cut(s)	317, 345, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.