Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005235

Physical Location & Seq

Genomic Coordinates Forward (+)

27405476 .. 27406147

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTTCACCTGCTTTCTCTTGTGCAATACCGAAATACATGCTGAAGCAGCAGCTTGTCATTGTGGCTGGAATAGCTCTGGTGCTAGTCCTAAGTGTACGTGTAGTAGAGGGTCAAAATTGTAGTTGTGCTGCAGACCTGTGCTGCAGCCGATACGGCTACTGCGGCACAGGCGATGACTACTGCGGGACGGGATGCCAAGCGGGGCCTTGCAACACGGCGCCTCTACCTCCCAGTACCAGTGATGTTCCGGTGGCCGACATCGTGACCCCGACATTCTTCAACGGGATAATTGATCAAGCGGAAGCAAGCTGTGCCGGGAAGGACTTTTATTCTCGGGCAACGTTCCTTGATGCTCTCGAGTTGTATGATCAGTTTGGTAAGATTGGTTCCCTTGATGATTCTAAACGGGAGATTGCTGCCTTCTTTGCCCACGTCACCCATGAGACTGGACGTAAATTTTTGCTACATAGAAGAGATAGACGGAGCATCAAAAGACTACTGCGACGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0010262 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

171

Amino Acids

18.6

Weight (kDa)

7.49

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chitin_bind_1	PF00187	39 - 71	1.2e-08	Chitin recognition protein
Glyco_hydro_19	PF00182	89 - 151	3.1e-09	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54420
fragaria_vesca	FvH4_4g10640
malus_domestica	MD04G1048000.v1.1
prunus_persica	Prupe.1G204000_v2.0.a1 Prupe.1G204700_v2.0.a1 Prupe.1G204800_v2.0.a1
pyrus_communis	pycom04g04190
rosa_chinensis	RchiOBHm_Chr4g0406271 RchiOBHm_Chr7g0219281
rosa_laevigata	RLG00000002299 RLG00000008782
rosa_multiflora	Rmu_sc0005137.1_g000013 Rmu_sc0009785.1_g000018 Rmu_ssc0000456.1_g000006
rosa_roxburghii	Rroxscaffold_3G00240100 Rroxscaffold_5G00351010
rosa_rugosa	Rorug04G0067400 Rorug07G0184100
rosa_samantha	Rh4AG136900 Rh4BG134500 Rh4CG145100 Rh4DG131600 Rh7AG327100 Rh7BG317000 Rh7CG344400 Rh7DG322500
rosa_wichuraiana	Rw4G011100 Rw4G011240 Rw7G027540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	4 cut(s)	165, 186, 203, 302
AclI	AACGTT	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	2 cut(s)	99, 238
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	436
AluBI	AGCT	3 cut(s)	55, 77, 312
AluI	AGCT	3 cut(s)	55, 77, 312
Alw26I	GTCTC	2 cut(s)	440, 504
Ama87I	CYCGRG	2 cut(s)	336, 359
AoxI	GGCC	2 cut(s)	206, 255
ApeKI	GCWGC	6 cut(s)	49, 52, 131, 144, 147, 419
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	2 cut(s)	336, 359
BanI	GGYRCC	1 cut(s)	220
BbvI	GCAGC	6 cut(s)	61, 64, 118, 131, 159, 406
BceAI	ACGGC	2 cut(s)	172, 234
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BclI	TGATCA	2 cut(s)	295, 370
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	440, 504
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	132, 145
BfoI	RGCGCY	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	19
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	7 cut(s)	50, 53, 132, 145, 148, 166, 420
BlsI	GCNGC	7 cut(s)	51, 54, 133, 146, 149, 167, 421
Bme1390I	CCNGG	1 cut(s)	319
BmeT110I	CYCGRG	2 cut(s)	336, 359
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	3 cut(s)	207, 222, 391
BmrFI	CCNGG	1 cut(s)	319
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	185, 343, 498
BmuI	ACTGGG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	250
Bse1I	ACTGG	3 cut(s)	234, 240, 454
BseGI	GGATG	1 cut(s)	200
BseNI	ACTGG	3 cut(s)	234, 240, 454
BseXI	GCAGC	6 cut(s)	61, 64, 118, 131, 159, 406
BshFI	GGCC	2 cut(s)	208, 257
BshNI	GGYRCC	1 cut(s)	220
BsiHKCI	CYCGRG	2 cut(s)	336, 359
BsiSI	CCGG	2 cut(s)	251, 318
BslFI	GGGAC	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	440, 504
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	208, 257
BsoBI	CYCGRG	2 cut(s)	336, 359
Bsp143I	GATC	2 cut(s)	295, 370
BspACI	CCGC	4 cut(s)	165, 186, 203, 302
BspANI	GGCC	2 cut(s)	208, 257
BspLI	GGNNCC	3 cut(s)	207, 222, 391
BspMAI	CTGCAG	2 cut(s)	136, 149
BspMI	ACCTGC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	3 cut(s)	234, 240, 454
BssMI	GATC	2 cut(s)	295, 370
BssNI	GRCGYC	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	469
BstACI	GRCGYC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	298, 373
BstMAI	GTCTC	2 cut(s)	440, 504
BstMBI	GATC	2 cut(s)	295, 370
BstMWI	GCNNNNNNNGC	7 cut(s)	49, 74, 156, 165, 171, 314, 428
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	2 cut(s)	132, 145
BstV1I	GCAGC	6 cut(s)	61, 64, 118, 131, 159, 406
BstXI	CCANNNNNNTGG	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	208, 257
BtgZI	GCGATG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	247
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	98, 237
CviAII	CATG	2 cut(s)	40, 443
CviJI	RGCY	8 cut(s)	55, 68, 77, 150, 159, 208, 257, 312
CviKI_1	RGCY	8 cut(s)	55, 68, 77, 150, 159, 208, 257, 312
CviQI	GTAC	2 cut(s)	98, 237
DdeI	CTNAG	1 cut(s)	92
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	2 cut(s)	297, 372
DpnII	GATC	2 cut(s)	295, 370
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	2 cut(s)	336, 359
EcoO109I	RGGNCCY	1 cut(s)	206
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
FaeI	CATG	2 cut(s)	43, 446
FaiI	YATR	4 cut(s)	41, 369, 444, 471
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	39, 442
FauI	CCCGC	2 cut(s)	179, 196
FbaI	TGATCA	2 cut(s)	295, 370
Fnu4HI	GCNGC	7 cut(s)	50, 53, 132, 145, 148, 166, 420
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	7 cut(s)	50, 53, 132, 145, 148, 166, 420
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	7 cut(s)	50, 53, 132, 145, 148, 166, 420
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	208, 257
HapII	CCGG	2 cut(s)	251, 318
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	43, 446
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	401
HpaII	CCGG	2 cut(s)	251, 318
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	8, 98
Hpy188III	TCNNGA	2 cut(s)	265, 359
Hpy8I	GTNNAC	2 cut(s)	8, 98
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	316, 433
HpyCH4IV	ACGT	4 cut(s)	100, 344, 435, 454
HpyCH4V	TGCA	4 cut(s)	26, 134, 147, 213
HpyF10VI	GCNNNNNNNGC	7 cut(s)	49, 74, 156, 165, 171, 314, 428
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	4 cut(s)	100, 344, 435, 454
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	43, 446
HspAI	GCGC	1 cut(s)	221
KasI	GGCGCC	1 cut(s)	220
Ksp22I	TGATCA	2 cut(s)	295, 370
Kzo9I	GATC	2 cut(s)	295, 370
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	6 cut(s)	61, 64, 118, 131, 159, 406
LweI	GCATC	3 cut(s)	185, 343, 498
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	4 cut(s)	100, 344, 435, 454
MaeIII	GTNAC	2 cut(s)	265, 436
MalI	GATC	2 cut(s)	297, 372
MboI	GATC	2 cut(s)	295, 370
MboII	GAAGA	2 cut(s)	271, 486
MluCI	AATT	3 cut(s)	118, 291, 458
Mly113I	GGCGCC	1 cut(s)	221
MnlI	CCTC	3 cut(s)	103, 234, 240
MspI	CCGG	2 cut(s)	251, 318
MspR9I	CCNGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	7 cut(s)	49, 74, 156, 165, 171, 314, 428
NarI	GGCGCC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	2 cut(s)	295, 370
NlaIII	CATG	2 cut(s)	43, 446
NlaIV	GGNNCC	3 cut(s)	207, 222, 391
NmuCI	GTSAC	2 cut(s)	265, 436
NspI	RCATGY	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	7 cut(s)	51, 54, 133, 146, 149, 167, 421
PluTI	GGCGCC	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	101
Psp1406I	AACGTT	1 cut(s)	344
PspN4I	GGNNCC	3 cut(s)	207, 222, 391
PspPI	GGNCC	1 cut(s)	206
PsrI	GAACNNNNNNTAC	2 cut(s)	373, 405
PstI	CTGCAG	2 cut(s)	136, 149
RsaI	GTAC	2 cut(s)	99, 238
RsaNI	GTAC	2 cut(s)	98, 237
SatI	GCNGC	7 cut(s)	50, 53, 132, 145, 148, 166, 420
Sau3AI	GATC	2 cut(s)	295, 370
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	319
SfaNI	GCATC	3 cut(s)	185, 343, 498
SfcI	CTRYAG	2 cut(s)	132, 145
SfoI	GGCGCC	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	118, 291, 458
SsiI	CCGC	4 cut(s)	165, 186, 203, 302
SspDI	GGCGCC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	317
TaiI	ACGT	4 cut(s)	103, 347, 438, 457
TaqI	TCGA	1 cut(s)	360
TasI	AATT	3 cut(s)	118, 291, 458
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	401
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	265, 436
TseI	GCWGC	6 cut(s)	49, 52, 131, 144, 147, 419
Tsp45I	GTSAC	2 cut(s)	265, 436
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.