Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Reverse (-)

27534524 .. 27535821

Gene Structure 1298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTTATGTTTGACCTAGGAATGATCCGCTGGACTAGGAAGCACACTTTCAGCTGGAGAAATTTCCTAAGACATAGAAGGAAGGGTGAAAGCATTATTGATTGTTGTGCTGCTCCTGGAGGAAAGACTCTTTACATTGCGTCACTTTTGAGTGGCCAAGGTATGGTATATGCAATTGACATAAATGAAGGGCGGTTGAGAATCCTCAAAGAAATGGCTAAGTTGCACCAAGTAGATGGTGTCATCACCACTATCCATGTTGATATGCATAGTTATACTGACAATAATGCTATGAAGTGTGATACAGTTCTGCTGGATGCTCCATGTTCTGGACTGCATGTTCTCCCCAAGGGCAGACTTACGTTGGAACAGTGGAGATTAGAGGATATGGAGGAGCTTAAGAATTTGCAGGATGAGCTCCTTGATTTTGCTTCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

146

Amino Acids

16.79

Weight (kDa)

7.0

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM5-TYW2_MTfase	PF02475	4 - 117	6.1e-08	TRM5/TYW2 methyltransferase domain
Methyltr_RsmB-F	PF01189	27 - 143	4.3e-24	16S rRNA methyltransferase RsmB/F
FtsJ	PF01728	27 - 118	2.5e-08	FtsJ-like methyltransferase
Methyltransf_15	PF09445	30 - 130	5.8e-07	RNA cap guanine-N2 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	163, 329
AciI	CCGC	2 cut(s)	28, 193
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	61, 403
AfiI	CCNNNNNNNGG	2 cut(s)	163, 329
AflII	CTTAAG	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	115
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	3 cut(s)	54, 397, 418
AluI	AGCT	3 cut(s)	54, 397, 418
Alw21I	GWGCWC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	61, 403
AspA2I	CCTAGG	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	98, 238
AvrII	CCTAGG	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	117
BfaI	CTAG	2 cut(s)	17, 36
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	1 cut(s)	111
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	2 cut(s)	76, 138
BsaJI	CCNNGG	3 cut(s)	16, 157, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 329
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	16, 157, 348
BseGI	GGATG	2 cut(s)	322, 418
BseLI	CCNNNNNNNGG	2 cut(s)	163, 329
BseMI	GCAATG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	163, 329
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	28, 193
BspANI	GGCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	3 cut(s)	16, 157, 348
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	3 cut(s)	16, 157, 348
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	307, 372
BstAFI	CTTAAG	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	68, 219
BstF5I	GGATG	2 cut(s)	322, 418
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	322, 418
BtsIMutI	CAGTG	1 cut(s)	377
CseI	GACGC	1 cut(s)	129
CviAII	CATG	3 cut(s)	257, 324, 338
CviJI	RGCY	5 cut(s)	54, 156, 218, 397, 418
CviKI_1	RGCY	5 cut(s)	54, 156, 218, 397, 418
DdeI	CTNAG	2 cut(s)	68, 219
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	3 cut(s)	16, 157, 348
Eco24I	GRGCYC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	3 cut(s)	16, 157, 348
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	3 cut(s)	16, 157, 348
FaeI	CATG	3 cut(s)	260, 327, 341
FatI	CATG	3 cut(s)	256, 323, 337
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	2 cut(s)	329, 425
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	17, 36
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	76, 138
HaeIII	GGCC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	260, 327, 341
HinfI	GANTC	2 cut(s)	127, 201
HphI	GGTGA	2 cut(s)	98, 238
Hpy188III	TCNNGA	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	72, 76, 182
HpyCH4III	ACNGT	2 cut(s)	307, 372
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	5 cut(s)	173, 226, 268, 337, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	2 cut(s)	68, 219
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	3 cut(s)	260, 327, 341
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	4 cut(s)	118, 325, 394, 423
LpnPI	CCDG	7 cut(s)	16, 40, 102, 129, 299, 315, 395
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	17, 36
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	3 cut(s)	61, 174, 403
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	4 cut(s)	113, 215, 376, 385
Mox20I	TGGCCA	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	30, 54
MspCI	CTTAAG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	260, 327, 341
NmuCI	GTSAC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	201
PflMI	CCANNNNNTGG	2 cut(s)	163, 329
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	6 cut(s)	18, 56, 163, 365, 399, 420
SfaNI	GCATC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	61, 174, 403
SsiI	CCGC	2 cut(s)	28, 193
SspMI	CTAG	2 cut(s)	17, 36
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	3 cut(s)	16, 157, 348
TaaI	ACNGT	2 cut(s)	307, 372
TaiI	ACGT	1 cut(s)	365
TasI	AATT	3 cut(s)	61, 174, 403
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	201, 308
TspRI	CASTG	1 cut(s)	377
Van91I	CCANNNNNTGG	2 cut(s)	163, 329
Vha464I	CTTAAG	1 cut(s)	398
XapI	RAATTY	2 cut(s)	61, 403
XceI	RCATGY	1 cut(s)	341
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	17, 36
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.