RchiOBHm_Chr4g0425531
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
51142803 .. 51146865
4063 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39468

Sequence Viewer

Length: 279 bp
ATGGTATATGCAATTGACATAAATGAAGGGCGGTTGAGAATCCTCAAAGAAATGGCTAAGTTGCACCAAGTAGATGGTGTCATCACCACTATCCATGCTGATATGCGTAGTTATACTGACAATAATACTATGAAGTGTGATAAAGTTCTGCTGGATGCTCCATGTTCTGGACTGCGTGTTCTCCCCAAGGGCAGACTTGCGTTGGAACAGTGGAGATTAGAGGATATGGAGGAGCTTAAGAATTTGCAGGATGAGCTCCTTGATTTTGCTTCTCGGTAG

Protein Analysis

92

Amino Acids

10.62

Weight (kDa)

5.3

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltr_RsmB-F PF01189 2 - 89 1.4e-12 16S rRNA methyltransferase RsmB/F
TRM5-TYW2_MTfase PF02475 2 - 63 1.7e-06 TRM5/TYW2 methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AciI CCGC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 236
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AluBI AGCT 2 cut(s) 235, 256
AluI AGCT 2 cut(s) 235, 256
Alw21I GWGCWC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 236
BmsI GCATC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 160, 256
BseLI CCNNNNNNNGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 258
BspACI CCGC 1 cut(s) 31
BspTI CTTAAG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 160, 256
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 160, 256
BtsIMutI CAGTG 1 cut(s) 215
CviAII CATG 2 cut(s) 95, 162
CviJI RGCY 3 cut(s) 56, 235, 256
CviKI_1 RGCY 3 cut(s) 56, 235, 256
DdeI CTNAG 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 98, 165
FaiI YATR 9 cut(s) 7, 9, 20, 96, 104, 114, 131, 163, 227
FatI CATG 2 cut(s) 94, 161
FokI GGATG 2 cut(s) 167, 263
FriOI GRGCYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 98, 165
HinfI GANTC 1 cut(s) 39
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 11, 64, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 98, 165
LmnI GCTCC 3 cut(s) 163, 232, 261
LpnPI CCDG 3 cut(s) 137, 153, 233
LweI GCATC 1 cut(s) 145
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 2 cut(s) 12, 241
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 3 cut(s) 53, 214, 223
MseI TTAA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 236
MunI CAATTG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 253
NlaIII CATG 2 cut(s) 98, 165
PfeI GAWTC 1 cut(s) 39
PflMI CCANNNNNTGG 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 258
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 237
SduI GDGCHC 1 cut(s) 258
SetI ASST 2 cut(s) 237, 258
SfaNI GCATC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 12, 241
SsiI CCGC 1 cut(s) 31
SstI GAGCTC 1 cut(s) 258
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 210
TasI AATT 2 cut(s) 12, 241
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 39, 146
TspRI CASTG 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.