Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017981.1

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Forward (+)

732 .. 3272

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggagaacctgatctcgctggtcaacaaaatccaaagagcttgcacagctctcggtgaccactgcgaagctgactctttgggactcgcttccctctatcgctgtcgtcggtggcggccaggtctggtagtttatgttgtagatcctccacagggtgaaagcattattgattgttgtgctgctcctggaggaaagactctttacattgcgtcacttttgagtggccaaggtatggtatatgcaattgacataaatgaagggcggttgagaatcctcaaagaaatggctaagttgcaccaagtagatggtgtcatcaccactatccatgctgatactgacaataatactatgaagtgtgataaagttctgctggatgctccatgttctggactgtgtgttctccccaagttatttgatgctatatctcttattgactttttgaagagggcagacttgcgttggaacaggagattagaggatatggaggagcttaagaatttgcaggatgagctccttgattttgcttctcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

177

Amino Acids

19.73

Weight (kDa)

5.39

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	232, 386
AciI	CCGC	2 cut(s)	115, 262
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	2 cut(s)	116, 223
AcsI	RAATTY	1 cut(s)	496
AdeI	CACNNNGTG	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	152, 232, 386
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	2 cut(s)	118, 184
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	41, 50, 71, 490, 511
AluI	AGCT	5 cut(s)	41, 50, 71, 490, 511
Alw21I	GWGCWC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	116, 223
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	496
AsuHPI	GGTGA	3 cut(s)	68, 167, 307
BalI	TGGCCA	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	2 cut(s)	120, 186
BfrI	CTTAAG	1 cut(s)	491
BisI	GCNGC	2 cut(s)	116, 180
BlsI	GCNGC	2 cut(s)	117, 181
Bme1390I	CCNGG	2 cut(s)	120, 186
BmrFI	CCNGG	2 cut(s)	120, 186
BmsI	GCATC	2 cut(s)	364, 406
BpmI	CTGGAG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 232, 386
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	120, 186
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	379, 511
BseLI	CCNNNNNNNGG	3 cut(s)	152, 232, 386
BseMI	GCAATG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	118, 225
BsiHKAI	GWGCWC	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	152, 232, 386
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	118, 225
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	12, 142
BspACI	CCGC	2 cut(s)	115, 262
BspANI	GGCC	2 cut(s)	118, 225
BspPI	GGATC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	12, 142
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	120, 186
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	379, 511
BstKTI	GATC	2 cut(s)	15, 145
BstMBI	GATC	2 cut(s)	12, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 508
BstNI	CCWGG	2 cut(s)	120, 186
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	118, 184
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	118, 225
BtsCI	GGATG	2 cut(s)	379, 511
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	198
CviAII	CATG	2 cut(s)	326, 381
CviJI	RGCY	8 cut(s)	41, 50, 71, 118, 225, 287, 490, 511
CviKI_1	RGCY	8 cut(s)	41, 50, 71, 118, 225, 287, 490, 511
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	14, 144
DpnII	GATC	2 cut(s)	12, 142
DraIII	CACNNNGTG	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	116, 223
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	511
Eco91I	GGTNACC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	511
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	118, 184
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	329, 384
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	325, 380
Fnu4HI	GCNGC	2 cut(s)	116, 180
FokI	GGATG	2 cut(s)	386, 518
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	2 cut(s)	116, 180
GluI	GCNGC	2 cut(s)	116, 180
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	118, 225
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	329, 384
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	74, 84, 196, 270
HphI	GGTGA	3 cut(s)	68, 167, 307
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	45, 242, 295, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 508
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	329, 384
Kzo9I	GATC	2 cut(s)	12, 142
LmnI	GCTCC	4 cut(s)	187, 382, 487, 516
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	364, 406
MaeIII	GTNAC	2 cut(s)	56, 210
MalI	GATC	2 cut(s)	14, 144
MboI	GATC	2 cut(s)	12, 142
MboII	GAAGA	1 cut(s)	454
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	2 cut(s)	243, 496
MluNI	TGGCCA	1 cut(s)	225
MlyI	GAGTC	3 cut(s)	68, 78, 190
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	7 cut(s)	104, 156, 182, 284, 438, 469, 478
Mox20I	TGGCCA	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	120, 186
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	2 cut(s)	120, 186
MwoI	GCNNNNNNNGC	2 cut(s)	47, 508
NdeII	GATC	2 cut(s)	12, 142
NlaIII	CATG	2 cut(s)	329, 384
NmuCI	GTSAC	2 cut(s)	56, 210
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	2 cut(s)	232, 386
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	117, 181
PleI	GAGTC	3 cut(s)	68, 78, 190
PpsI	GAGTC	3 cut(s)	68, 78, 190
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	118, 184
PspEI	GGTNACC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	118, 184
PsuI	RGATCY	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	116, 180
Sau3AI	GATC	2 cut(s)	12, 142
SchI	GAGTC	3 cut(s)	68, 78, 190
ScrFI	CCNGG	2 cut(s)	120, 186
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	8 cut(s)	12, 43, 52, 73, 124, 232, 492, 513
SfaNI	GCATC	2 cut(s)	364, 406
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	243, 496
SsiI	CCGC	2 cut(s)	115, 262
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	118, 184
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	393
TasI	AATT	2 cut(s)	243, 496
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	2 cut(s)	56, 210
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	2 cut(s)	56, 210
TspDTI	ATGAA	2 cut(s)	270, 365
TspRI	CASTG	1 cut(s)	68
Van91I	CCANNNNNTGG	2 cut(s)	232, 386
Vha464I	CTTAAG	1 cut(s)	491
XapI	RAATTY	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.