Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Forward (+)

68279602 .. 68282099

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGAACCTGATCTCGTTGGTCAACAAAATCCAAAGAGCTTGCACAGCTCTCGGTGACCACTGCGAAGCTGACACTTTGGGACTCGCTTCCCTCTATCGCTGTCGTCGGTGGCCAGGTCTGGTAGTTTCTGTTGTAGATCCTCCACAGGGTGAAAGCATTATTGATTGTTGTGCTACTCCTGGAGGAAAGACTCTTTACATTGCGTCACTTTTGAGTGGCCAAGGGCGGTTGAGAATCCTCAAAGAAATGGCTAAGTTGCACCAAGTAGATGGTGTCATCACCACTATCCATGCTGATATGCGTAGTTATACTGACAATAATACTATGAAGTGTGATAAAGTTCTGCTGGATGCTCCATGTTCTGGACTGCGTGTTCTCCCCAAGACTTGCGTTGGAACAGTGGAGATTAGAGGATATGGAGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

143

Amino Acids

15.4

Weight (kDa)

8.13

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	45 - 129	2.2e-14	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	2 cut(s)	113, 220
AdeI	CACNNNGTG	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	149, 365
AjnI	CCWGG	2 cut(s)	115, 181
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	4 cut(s)	41, 50, 71, 428
AluI	AGCT	4 cut(s)	41, 50, 71, 428
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	113, 220
AsuHPI	GGTGA	3 cut(s)	68, 164, 274
BalI	TGGCCA	2 cut(s)	115, 222
BccI	CCATC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	2 cut(s)	117, 183
Bme1390I	CCNGG	2 cut(s)	117, 183
BmrFI	CCNGG	2 cut(s)	117, 183
BmsI	GCATC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 365
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	117, 183
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	149, 365
BseMI	GCAATG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	115, 222
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	149, 365
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	115, 222
Bsp143I	GATC	2 cut(s)	12, 139
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	115, 222
BspPI	GGATC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	12, 139
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	117, 183
Bst4CI	ACNGT	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	15, 142
BstMBI	GATC	2 cut(s)	12, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	117, 183
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	115, 181
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	115, 222
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	61, 408
Cac8I	GCNNGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	195
CviAII	CATG	2 cut(s)	293, 360
CviJI	RGCY	7 cut(s)	41, 50, 71, 115, 222, 254, 428
CviKI_1	RGCY	7 cut(s)	41, 50, 71, 115, 222, 254, 428
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	14, 141
DpnII	GATC	2 cut(s)	12, 139
DraIII	CACNNNGTG	1 cut(s)	152
EaeI	YGGCCR	2 cut(s)	113, 220
Eco130I	CCWWGG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	115, 181
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	2 cut(s)	296, 363
FaiI	YATR	6 cut(s)	294, 302, 312, 329, 361, 420
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	292, 359
FokI	GGATG	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	115, 222
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	296, 363
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	84, 193, 237
HphI	GGTGA	3 cut(s)	68, 164, 274
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	45, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	296, 363
Kzo9I	GATC	2 cut(s)	12, 139
LmnI	GCTCC	2 cut(s)	361, 425
LpnPI	CCDG	9 cut(s)	23, 102, 107, 129, 134, 168, 195, 335, 351
LweI	GCATC	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	56, 207
MalI	GATC	2 cut(s)	14, 141
MboI	GATC	2 cut(s)	12, 139
MflI	RGATCY	1 cut(s)	139
MlsI	TGGCCA	2 cut(s)	115, 222
MluNI	TGGCCA	2 cut(s)	115, 222
MlyI	GAGTC	2 cut(s)	78, 187
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	6 cut(s)	104, 153, 179, 251, 407, 416
Mox20I	TGGCCA	2 cut(s)	115, 222
MscI	TGGCCA	2 cut(s)	115, 222
MseI	TTAA	1 cut(s)	430
Msp20I	TGGCCA	2 cut(s)	115, 222
MspR9I	CCNGG	2 cut(s)	117, 183
MvaI	CCWGG	2 cut(s)	117, 183
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	12, 139
NlaIII	CATG	2 cut(s)	296, 363
NmuCI	GTSAC	2 cut(s)	56, 207
PfeI	GAWTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	181
PleI	GAGTC	2 cut(s)	78, 187
PpsI	GAGTC	2 cut(s)	78, 187
Psp6I	CCWGG	2 cut(s)	115, 181
PspEI	GGTNACC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	115, 181
PsuI	RGATCY	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	430
Sau3AI	GATC	2 cut(s)	12, 139
SchI	GAGTC	2 cut(s)	78, 187
ScrFI	CCNGG	2 cut(s)	117, 183
SetI	ASST	6 cut(s)	12, 43, 52, 73, 121, 430
SfaNI	GCATC	1 cut(s)	343
SsiI	CCGC	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	115, 181
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TscAI	CASTG	2 cut(s)	68, 408
TseFI	GTSAC	2 cut(s)	56, 207
Tsp45I	GTSAC	2 cut(s)	56, 207
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	68, 408
Van91I	CCANNNNNTGG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.