Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Forward (+)

35892160 .. 35894646

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGAACCTGATCTCACTGGTCAACAAAATCCAAAGAGCTTGCACGGCTCTCGGTGACCACTGCGAAGCTGACTCTTTGGGACTCGCTTCCCTCTATCGCTGTCGTCGGTGGCCAGGTCTGGTAGTTTCTGTTGTAGATCCTCCACAGGGTGAAAGCATTATTGATTGTTGTGCTGCTTCTGGAGGAAAGACTCTTTACATTGCGTCACTTTTGAGTGGCCAAGGGCGGTTGAGAATCCTCAAAGAAATGGCTAAGTTGCACCAAGTAGATGGTGTCATCACCACTATCCATGCTGATATGCGTAGTTATACTGACAATAATACTATGAAGTGTGATAAAGTTCTGCTGGATGCTCCATGTTCTGGACTGCGTGTTCTCCCCAAGAGGGCAGACTTGCGTTGGAACAGTGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

139

Amino Acids

15.16

Weight (kDa)

8.18

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	45 - 136	3.2e-16	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	365
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	2 cut(s)	113, 220
AdeI	CACNNNGTG	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	149, 365, 388
AjnI	CCWGG	1 cut(s)	115
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	2 cut(s)	41, 71
AluI	AGCT	2 cut(s)	41, 71
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	113, 220
ApeKI	GCWGC	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	68, 164, 274
BalI	TGGCCA	2 cut(s)	115, 222
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 365, 388
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	3 cut(s)	149, 365, 388
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	2 cut(s)	115, 222
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	149, 365, 388
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	115, 222
Bsp143I	GATC	2 cut(s)	12, 139
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	115, 222
BspPI	GGATC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	12, 139
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	15, 142
BstMBI	GATC	2 cut(s)	12, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	115, 222
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	17, 61, 415
Cac8I	GCNNGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	195
CviAII	CATG	2 cut(s)	293, 360
CviJI	RGCY	6 cut(s)	41, 50, 71, 115, 222, 254
CviKI_1	RGCY	6 cut(s)	41, 50, 71, 115, 222, 254
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	14, 141
DpnII	GATC	2 cut(s)	12, 139
DraIII	CACNNNGTG	1 cut(s)	152
EaeI	YGGCCR	2 cut(s)	113, 220
Eco130I	CCWWGG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	2 cut(s)	296, 363
FaiI	YATR	5 cut(s)	294, 302, 312, 329, 361
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	2 cut(s)	292, 359
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	115, 222
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	296, 363
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	74, 84, 193, 237
HphI	GGTGA	3 cut(s)	68, 164, 274
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	183, 366
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	45, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	296, 363
Kzo9I	GATC	2 cut(s)	12, 139
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	9 cut(s)	5, 23, 102, 107, 129, 134, 168, 335, 351
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	56, 207
MalI	GATC	2 cut(s)	14, 141
MboI	GATC	2 cut(s)	12, 139
MflI	RGATCY	1 cut(s)	139
MlsI	TGGCCA	2 cut(s)	115, 222
MluNI	TGGCCA	2 cut(s)	115, 222
MlyI	GAGTC	3 cut(s)	68, 78, 187
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	5 cut(s)	104, 153, 179, 251, 381
Mox20I	TGGCCA	2 cut(s)	115, 222
MscI	TGGCCA	2 cut(s)	115, 222
Msp20I	TGGCCA	2 cut(s)	115, 222
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	2 cut(s)	12, 139
NlaIII	CATG	2 cut(s)	296, 363
NmuCI	GTSAC	2 cut(s)	56, 207
PfeI	GAWTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	3 cut(s)	68, 78, 187
PpsI	GAGTC	3 cut(s)	68, 78, 187
Psp6I	CCWGG	1 cut(s)	115
PspEI	GGTNACC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	139
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	12, 139
SchI	GAGTC	3 cut(s)	68, 78, 187
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	4 cut(s)	12, 43, 73, 121
SfaNI	GCATC	1 cut(s)	343
SsiI	CCGC	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	237
TscAI	CASTG	3 cut(s)	24, 68, 415
TseFI	GTSAC	2 cut(s)	56, 207
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	2 cut(s)	56, 207
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	3 cut(s)	24, 68, 415
Van91I	CCANNNNNTGG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.