Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Reverse (-)

22445975 .. 22448696

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0243300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAAACCAGAGAATTAGCTCAGAAAACTATGTCTCTGCTTGGAATTTGGGAGGTCTAGTTGTCACTCAAATGGCTCTGAAAGCTGCAATTGAGCTCAATGTCTTCAATATCATTGCCAATTCAGGACCCGGAGCTCATCTCACATCGAAAGAAATTGTATCTCAAATTTCAACTGAGAATCCAAATGAGGCAGCTGCGAATTTGAAGCGAATACTAAGAGTTCTAAGTGTTCACTCTCTACTCTCTGTTCAAAGGCCAAGCTCAAGTGGTAAAACAATGCAAGAAGAGACTTATGGTCTAACAAAGGAGACTCTTTGGCTAGTTCCAAATGAAGATGGAGTTTCCTTAGCTCCATTTATTTTGTTATCTTCTGAAATGGACATGGTGAAAAGCTTATCCATGCTCAAAGACACAGTGCTTGAACCTGGGTGCCTTCCTTTCAACAAGGCTTTTGGTATGTCCATATATGAGTACATGTCTGAGAAACCTGACCTGTGCCAATTGTTTAATAAGGGTGTAGGCCAAAGTTCCATCCTCGATTTTGAAGAGGTGTTAAAGGTTTACAAAGGTTTTGAAGAGGTAGAAGAGTTGATGGATGTTGGAGGAGGTGATGGAATGACAATTTCAAAAGTAGTATCTAGATATCCACACATTCATGGGATTAACTTTGATTTGCCTAACGTTATCGCTCAAGGAACTGCTAAATATCAAACAGGTGTGAAATATGTTGGTGGAGATATGTTTCAGTTTATACCAAATGCACAGTCCATTATGTTGAAGTGGGTACTTCATAATTGGAATGATGATCTGTGTAAGAAAATATTGAAACGTTGTTGGGAGGCATTACCAAAAACCGGGAAGGTAATAGCTGTGGAACTTGCAATACCTGAAATACTAGAGAAAACCGAAGAGGTAAAGAAAATTGTGGCATTAGACGTGGTCATGATGGCTAGTCCCGGTGGTAGAGAACGAACAATTGCTGAGTTTGACGAACTATCAAAAGCTGCAGGCTTTGTTGAAACAAAGATTTTCTCAATTTCAAATGGGTGTTATGTTCTGGAGTTTCACAAAGTTGAAACATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

362

Amino Acids

40.13

Weight (kDa)

5.27

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	21 - 107	1.1e-11	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	135 - 339	1.8e-55	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AclI	AACGTT	2 cut(s)	684, 832
AcsI	RAATTY	3 cut(s)	46, 168, 202
AfaI	GTAC	2 cut(s)	476, 789
AfiI	CCNNNNNNNGG	1 cut(s)	857
AflIII	ACRYGT	1 cut(s)	477
AhdI	GACNNNNNGTC	1 cut(s)	297
AjiI	CACGTC	1 cut(s)	940
AjnI	CCWGG	1 cut(s)	427
Alw21I	GWGCWC	2 cut(s)	99, 139
Alw26I	GTCTC	3 cut(s)	40, 284, 305
AoxI	GGCC	2 cut(s)	257, 523
ApeKI	GCWGC	4 cut(s)	86, 194, 197, 1007
ApoI	RAATTY	3 cut(s)	46, 168, 202
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	3 cut(s)	132, 859, 960
AsuHPI	GGTGA	2 cut(s)	400, 623
AvaII	GGWCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	2 cut(s)	99, 139
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	99, 139
BbvI	GCAGC	4 cut(s)	73, 184, 206, 994
BccI	CCATC	5 cut(s)	332, 542, 589, 608, 943
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	3 cut(s)	132, 859, 960
BcoDI	GTCTC	3 cut(s)	40, 284, 305
BfaI	CTAG	5 cut(s)	59, 323, 642, 899, 954
BfmI	CTRYAG	1 cut(s)	1008
BisI	GCNGC	4 cut(s)	87, 195, 198, 1008
BlsI	GCNGC	4 cut(s)	88, 196, 199, 1009
Bme1390I	CCNGG	4 cut(s)	132, 429, 859, 960
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	940
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	130, 434
BmrFI	CCNGG	4 cut(s)	132, 429, 859, 960
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	1082
Bpu10I	CCTNAGC	1 cut(s)	349
BpuEI	CTTGAG	2 cut(s)	250, 678
BpuMI	CCSGG	3 cut(s)	132, 859, 960
BsaJI	CCNNGG	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	857
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	534, 604
BseLI	CCNNNNNNNGG	1 cut(s)	857
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	4 cut(s)	36, 168, 474, 975
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	4 cut(s)	73, 184, 206, 994
BshFI	GGCC	2 cut(s)	259, 525
BshNI	GGYRCC	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	99, 139
BsiSI	CCGG	3 cut(s)	132, 858, 960
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	1 cut(s)	857
BsmAI	GTCTC	3 cut(s)	40, 284, 305
BsmFI	GGGAC	1 cut(s)	942
BsnI	GGCC	2 cut(s)	259, 525
Bsp1286I	GDGCHC	2 cut(s)	99, 139
Bsp143I	GATC	1 cut(s)	808
BspANI	GGCC	2 cut(s)	259, 525
BspCNI	CTCAG	4 cut(s)	35, 169, 475, 976
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	2 cut(s)	130, 434
BspMAI	CTGCAG	1 cut(s)	1012
BspT107I	GGYRCC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	1 cut(s)	808
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	418, 768
Bst6I	CTCTTC	5 cut(s)	282, 543, 573, 582, 906
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	7 cut(s)	22, 177, 218, 227, 349, 483, 984
BstF5I	GGATG	2 cut(s)	534, 604
BstKTI	GATC	1 cut(s)	811
BstMAI	GTCTC	3 cut(s)	40, 284, 305
BstMBI	GATC	1 cut(s)	808
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	4 cut(s)	130, 427, 857, 958
BstSFI	CTRYAG	1 cut(s)	1008
BstV1I	GCAGC	4 cut(s)	73, 184, 206, 994
BstV2I	GAAGAC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	259, 525
BtrI	CACGTC	1 cut(s)	940
BtsCI	GGATG	2 cut(s)	534, 604
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	1012
CciI	TCATGA	1 cut(s)	945
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	475, 788
CviAII	CATG	5 cut(s)	385, 403, 478, 659, 946
CviQI	GTAC	2 cut(s)	475, 788
DdeI	CTNAG	7 cut(s)	22, 177, 218, 227, 349, 483, 984
DpnI	GATC	1 cut(s)	810
DpnII	GATC	1 cut(s)	808
DriI	GACNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	5 cut(s)	282, 543, 573, 582, 906
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	5 cut(s)	282, 543, 573, 582, 906
Ecl136II	GAGCTC	2 cut(s)	97, 137
Eco24I	GRGCYC	2 cut(s)	99, 139
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	2 cut(s)	97, 137
EcoICRI	GAGCTC	2 cut(s)	97, 137
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	647
EcoT38I	GRGCYC	2 cut(s)	99, 139
FaeI	CATG	5 cut(s)	388, 406, 481, 662, 949
FaqI	GGGAC	1 cut(s)	942
FatI	CATG	5 cut(s)	384, 402, 477, 658, 945
Fnu4HI	GCNGC	4 cut(s)	87, 195, 198, 1008
FokI	GGATG	2 cut(s)	521, 611
FriOI	GRGCYC	2 cut(s)	99, 139
Fsp4HI	GCNGC	4 cut(s)	87, 195, 198, 1008
FspBI	CTAG	5 cut(s)	59, 323, 642, 899, 954
GluI	GCNGC	4 cut(s)	87, 195, 198, 1008
GsuI	CTGGAG	1 cut(s)	1082
HaeIII	GGCC	2 cut(s)	259, 525
HapII	CCGG	3 cut(s)	132, 858, 960
Hin1II	CATG	5 cut(s)	388, 406, 481, 662, 949
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	2 cut(s)	181, 313
HpaII	CCGG	3 cut(s)	132, 858, 960
HphI	GGTGA	2 cut(s)	400, 623
Hpy166II	GTNNAC	2 cut(s)	235, 565
Hpy188I	TCNGA	4 cut(s)	25, 81, 376, 484
Hpy188III	TCNNGA	4 cut(s)	126, 642, 946, 1061
Hpy8I	GTNNAC	2 cut(s)	235, 565
HpyAV	CCTTC	2 cut(s)	446, 856
HpyCH4III	ACNGT	2 cut(s)	418, 768
HpyCH4IV	ACGT	3 cut(s)	684, 832, 939
HpyCH4V	TGCA	5 cut(s)	89, 283, 764, 884, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	7 cut(s)	22, 177, 218, 227, 349, 483, 984
HpySE526I	ACGT	3 cut(s)	684, 832, 939
Hsp92II	CATG	5 cut(s)	388, 406, 481, 662, 949
Kzo9I	GATC	1 cut(s)	808
LmnI	GCTCC	2 cut(s)	134, 358
Lsp1109I	GCAGC	4 cut(s)	73, 184, 206, 994
MaeI	CTAG	5 cut(s)	59, 323, 642, 899, 954
MaeII	ACGT	3 cut(s)	684, 832, 939
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	810
MboI	GATC	1 cut(s)	808
MboII	GAAGA	8 cut(s)	97, 299, 347, 363, 560, 590, 599, 923
MfeI	CAATTG	3 cut(s)	90, 503, 978
MhlI	GDGCHC	2 cut(s)	99, 139
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	9 cut(s)	47, 184, 544, 548, 574, 599, 602, 835, 907
MseI	TTAA	3 cut(s)	510, 557, 666
MslI	CAYNNNNRTG	2 cut(s)	71, 657
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	132, 858, 960
MspR9I	CCNGG	4 cut(s)	132, 429, 859, 960
MunI	CAATTG	3 cut(s)	90, 503, 978
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	3 cut(s)	132, 859, 960
NdeII	GATC	1 cut(s)	808
NlaIII	CATG	5 cut(s)	388, 406, 481, 662, 949
NlaIV	GGNNCC	2 cut(s)	130, 434
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	481
PagI	TCATGA	1 cut(s)	945
PciI	ACATGT	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	941
PkrI	GCNGC	4 cut(s)	88, 196, 199, 1009
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	128
PscI	ACATGT	1 cut(s)	477
Psp124BI	GAGCTC	2 cut(s)	99, 139
Psp1406I	AACGTT	2 cut(s)	684, 832
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	130, 434
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	870, 902
PstI	CTGCAG	1 cut(s)	1012
PsyI	GACNNNGTC	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	476, 789
RsaNI	GTAC	2 cut(s)	475, 788
RseI	CAYNNNNRTG	2 cut(s)	71, 657
SacI	GAGCTC	2 cut(s)	99, 139
SaqAI	TTAA	3 cut(s)	510, 557, 666
SatI	GCNGC	4 cut(s)	87, 195, 198, 1008
Sau3AI	GATC	1 cut(s)	808
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	4 cut(s)	132, 429, 859, 960
SduI	GDGCHC	2 cut(s)	99, 139
SfcI	CTRYAG	1 cut(s)	1008
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	2 cut(s)	71, 657
SmlI	CTYRAG	2 cut(s)	265, 693
SmoI	CTYRAG	2 cut(s)	265, 693
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	5 cut(s)	59, 323, 642, 899, 954
SstI	GAGCTC	2 cut(s)	99, 139
StyD4I	CCNGG	4 cut(s)	130, 427, 857, 958
TaaI	ACNGT	2 cut(s)	418, 768
TaiI	ACGT	3 cut(s)	687, 835, 942
TaqI	TCGA	2 cut(s)	149, 540
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	3 cut(s)	510, 557, 666
Tru9I	TTAA	3 cut(s)	510, 557, 666
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	4 cut(s)	86, 194, 197, 1007
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	348, 647, 782
TspRI	CASTG	1 cut(s)	423
Tth111I	GACNNNGTC	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	3 cut(s)	46, 168, 202
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	1 cut(s)	481
XspI	CTAG	5 cut(s)	59, 323, 642, 899, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.