Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Forward (+)

2673524 .. 2675139

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG029700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAAATTTTGAGGCTGCACTTCAGCTGCCTTTACCTGGAAAAAAGGTTGAAGGACCAATATCTCCGGCTGTGTATCGGCCTGTCTACAAGGGTGAAATCATTAGTGATTGTTGTGCTGCTCCTAGAGGAAAGACTCTTTACATGGCGTCGCTTTTGAGTGGCCAAGGTATGGTATATGCAATTGACATAAATGAAGGGTGGTTGAGAATCCTCAAAGAAATGGCTAAGTTGCACCAAGTAGATGGTGTCATCACCACTATCCATGCTGATATGCGTAGTTATACTGACAATAATACTATGAAGTGTGATAAAGTTCTGTTGGATGCTCCATGTTCTGGACTGGGTGTTCTCTCCAAGAGGGCAGACTTGCGTTGGAACAGGAGATTAGAGGATATGGAGGAGCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

137

Amino Acids

15.23

Weight (kDa)

6.72

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	31 - 136	3.3e-24	16S rRNA methyltransferase RsmB/F
TRM5-TYW2_MTfase	PF02475	53 - 114	2.3e-06	TRM5/TYW2 methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	172, 338
AccI	GTMKAC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	38, 172, 338
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	2 cut(s)	28, 406
AluI	AGCT	2 cut(s)	28, 406
AoxI	GGCC	2 cut(s)	80, 163
ApeKI	GCWGC	3 cut(s)	17, 28, 119
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	107, 247
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	4, 15, 106
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	39
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	3 cut(s)	18, 29, 120
BlsI	GCNGC	3 cut(s)	19, 30, 121
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 172, 338
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	3 cut(s)	38, 172, 338
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	4, 15, 106
BshFI	GGCC	2 cut(s)	82, 165
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	38, 172, 338
BsnI	GGCC	2 cut(s)	82, 165
BspANI	GGCC	2 cut(s)	82, 165
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	4, 15, 106
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	82, 165
BtsCI	GGATG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	138
CviAII	CATG	3 cut(s)	145, 266, 333
CviJI	RGCY	7 cut(s)	17, 28, 71, 82, 165, 227, 406
CviKI_1	RGCY	7 cut(s)	17, 28, 71, 82, 165, 227, 406
DdeI	CTNAG	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	148, 269, 336
FatI	CATG	3 cut(s)	144, 265, 332
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	18, 29, 120
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	18, 29, 120
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	18, 29, 120
HaeIII	GGCC	2 cut(s)	82, 165
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	148, 269, 336
HinfI	GANTC	2 cut(s)	136, 210
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	107, 247
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	47, 191
HpyCH4V	TGCA	3 cut(s)	20, 182, 235
HpyF3I	CTNAG	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	148, 269, 336
LmnI	GCTCC	3 cut(s)	127, 334, 403
LpnPI	CCDG	7 cut(s)	24, 51, 81, 96, 324, 329, 367
Lsp1109I	GCAGC	3 cut(s)	4, 15, 106
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	126
MfeI	CAATTG	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	3 cut(s)	7, 183, 409
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	303, 356
MnlI	CCTC	6 cut(s)	7, 122, 224, 354, 385, 394
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	408, 412
Msp20I	TGGCCA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	39
NlaIII	CATG	3 cut(s)	148, 269, 336
PacI	TTAATTAA	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	210
PflMI	CCANNNNNTGG	2 cut(s)	172, 338
PkrI	GCNGC	3 cut(s)	19, 30, 121
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	408, 412
SatI	GCNGC	3 cut(s)	18, 29, 120
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	5 cut(s)	30, 40, 51, 172, 408
SfaNI	GCATC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	3 cut(s)	7, 183, 409
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	166
TasI	AATT	3 cut(s)	7, 183, 409
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	408, 412
Tru9I	TTAA	2 cut(s)	408, 412
TseI	GCWGC	3 cut(s)	17, 28, 119
TspDTI	ATGAA	2 cut(s)	210, 317
Van91I	CCANNNNNTGG	2 cut(s)	172, 338
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.