Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Reverse (-)

69302192 .. 69307145

Gene Structure 4954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG473800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTTCTGGTCGCAGAGGATAATACGCATCAGGAGATAGAGGAGGTTCAGAGACTGTTCAGATCTGCCGCCAGGGATTGCGTTGTAAATTTAAGATTCACAAAAGCCAATGGGATTGTGGTACCAGAAAATGGTACCACAAAAGCCAAGTCTTCTCTGAGTGAGTCTGTCAACTCCATTTCAGATTCATTTCAGCAGTCCACATTCTTAGAGACCCAATTCAGAAACAATGGTGGAGAGCAAGACTGTGCATTCACCATTGGTGACTTACGCTTCCATGCTTTCACTGCTTACTTTCTGCCCTCCATTTGTCATTATTTTATGGTAGTTTCTGTTGTAGATCCTCAGCAGGGTGAAATCATTAGTGATTGTTGTGCTGCTCCTAGAGGAAAGACTCTTTACATGGCGTCGCTTTTGAGTGGCCAAGGTATGGTATATGCAATTGACATAAATGAAGGGTGGTTGAGAATCCTCAAAGAAATGTCTAAGTTGCACCAAGTAGATGGTGTCATCACCACCATCCATGCTGATATGCGTAGTTATACTGACAATAATACTATGAAGTGTGATAAAGTTCTGTTGGATGCTCCATGTTTTGGACTGGGTGTTCTCTCCAAGGTGATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

209

Amino Acids

23.21

Weight (kDa)

5.33

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	112 - 206	2.6e-19	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	121, 134
AccB1I	GGYRCC	2 cut(s)	121, 134
AccB7I	CCANNNNNTGG	3 cut(s)	131, 430, 596
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	407
AfaI	GTAC	2 cut(s)	123, 136
AfiI	CCNNNNNNNGG	4 cut(s)	131, 350, 430, 596
AjnI	CCWGG	1 cut(s)	71
AloI	GAACNNNNNNTCC	2 cut(s)	591, 623
Alw26I	GTCTC	2 cut(s)	46, 206
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp718I	GGTACC	2 cut(s)	121, 134
AsuHPI	GGTGA	4 cut(s)	247, 275, 365, 505
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	2 cut(s)	121, 134
BbsI	GAAGAC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	497, 527
BciT130I	CCWGG	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	46, 206
BfaI	CTAG	1 cut(s)	384
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	2 cut(s)	69, 378
BlsI	GCNGC	2 cut(s)	70, 379
Bme1390I	CCNGG	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	123, 136
BmrFI	CCNGG	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	2 cut(s)	37, 574
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	72, 424, 615
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 350, 430, 596
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	72, 424, 615
BseGI	GGATG	2 cut(s)	519, 589
BseLI	CCNNNNNNNGG	4 cut(s)	131, 350, 430, 596
BseMII	CTCAG	2 cut(s)	149, 359
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	423
BshNI	GGYRCC	2 cut(s)	121, 134
BslI	CCNNNNNNNGG	4 cut(s)	131, 350, 430, 596
BsmAI	GTCTC	2 cut(s)	46, 206
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	62, 340
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	2 cut(s)	150, 358
BspLI	GGNNCC	2 cut(s)	123, 136
BspPI	GGATC	1 cut(s)	335
BspT107I	GGYRCC	2 cut(s)	121, 134
BspTNI	GGTCTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	3 cut(s)	72, 424, 615
BssMI	GATC	2 cut(s)	62, 340
BssNI	GRCGYC	1 cut(s)	407
BssT1I	CCWWGG	2 cut(s)	424, 615
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	57, 248
BstACI	GRCGYC	1 cut(s)	407
BstDEI	CTNAG	4 cut(s)	158, 208, 345, 486
BstF5I	GGATG	2 cut(s)	519, 589
BstKTI	GATC	2 cut(s)	65, 343
BstMAI	GTCTC	2 cut(s)	46, 206
BstMBI	GATC	2 cut(s)	62, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	62, 340
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	2 cut(s)	62, 340
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	519, 589
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	55
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	122, 135
CviAII	CATG	4 cut(s)	278, 403, 524, 591
CviJI	RGCY	3 cut(s)	107, 146, 423
CviKI_1	RGCY	3 cut(s)	107, 146, 423
CviQI	GTAC	2 cut(s)	122, 135
DdeI	CTNAG	4 cut(s)	158, 208, 345, 486
DpnI	GATC	2 cut(s)	64, 342
DpnII	GATC	2 cut(s)	62, 340
EaeI	YGGCCR	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	424, 615
Eco31I	GGTCTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	424, 615
ErhI	CCWWGG	2 cut(s)	424, 615
FaeI	CATG	4 cut(s)	281, 406, 527, 594
FatI	CATG	4 cut(s)	277, 402, 523, 590
Fnu4HI	GCNGC	2 cut(s)	69, 378
FokI	GGATG	2 cut(s)	506, 596
Fsp4HI	GCNGC	2 cut(s)	69, 378
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	69, 378
HaeIII	GGCC	1 cut(s)	423
HgaI	GACGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	4 cut(s)	281, 406, 527, 594
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	5 cut(s)	96, 164, 185, 394, 468
HphI	GGTGA	4 cut(s)	247, 275, 365, 505
Hpy166II	GTNNAC	2 cut(s)	172, 201
Hpy188I	TCNGA	5 cut(s)	51, 62, 159, 184, 224
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	2 cut(s)	172, 201
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	2 cut(s)	57, 248
HpyCH4V	TGCA	3 cut(s)	251, 440, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	4 cut(s)	158, 208, 345, 486
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	281, 406, 527, 594
KpnI	GGTACC	2 cut(s)	125, 138
Kzo9I	GATC	2 cut(s)	62, 340
LmnI	GCTCC	2 cut(s)	385, 592
LpnPI	CCDG	6 cut(s)	17, 58, 85, 138, 335, 587
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	37, 574
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	64, 342
MboI	GATC	2 cut(s)	62, 340
MboII	GAAGA	1 cut(s)	144
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	2 cut(s)	62, 340
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	3 cut(s)	88, 218, 441
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	173, 388
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	7 cut(s)	10, 34, 37, 313, 354, 380, 482
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	2 cut(s)	62, 340
NlaIII	CATG	4 cut(s)	281, 406, 527, 594
NlaIV	GGNNCC	2 cut(s)	123, 136
NmuCI	GTSAC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	96, 185, 468
PflMI	CCANNNNNTGG	3 cut(s)	131, 430, 596
PkrI	GCNGC	2 cut(s)	70, 379
PleI	GAGTC	2 cut(s)	172, 388
PpsI	GAGTC	2 cut(s)	172, 388
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	123, 136
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	62, 340
RsaI	GTAC	2 cut(s)	123, 136
RsaNI	GTAC	2 cut(s)	122, 135
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	69, 378
Sau3AI	GATC	2 cut(s)	62, 340
SchI	GAGTC	2 cut(s)	173, 388
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	3 cut(s)	48, 430, 621
SfaNI	GCATC	2 cut(s)	37, 574
Sse9I	AATT	3 cut(s)	88, 218, 441
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	424, 615
TaaI	ACNGT	2 cut(s)	57, 248
TasI	AATT	3 cut(s)	88, 218, 441
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	96, 185, 468
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	177, 468, 575
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	3 cut(s)	131, 430, 596
XapI	RAATTY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.