Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Reverse (-)

8934368 .. 8934758

Gene Structure 391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCTAAGTTGCACCAAGTAGATGGTGTCATCACCACTATCCATGCTGATATGCGTAGTTATACTGACAATAATACTATGAAGTGTGATAAAGTTCTGCTGGATGCTCCATGTTCTGGACTGCGTGTTCTCCCCAAGAGGGCAGACTTGCGTTGGAACAGGAGATTAGAGGATATGGAGGAGCTTAAGAATTTGCAGGATGAGCTCCTTGATTTTGCTTCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

75

Amino Acids

8.72

Weight (kDa)

6.05

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	11 - 72	1.1e-14	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	116, 139
AflII	CTTAAG	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	2 cut(s)	184, 205
AluI	AGCT	2 cut(s)	184, 205
Alw21I	GWGCWC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	17
BfrI	CTTAAG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 139
BseGI	GGATG	2 cut(s)	109, 205
BseLI	CCNNNNNNNGG	2 cut(s)	116, 139
BseRI	GAGGAG	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	116, 139
Bsp1286I	GDGCHC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	109, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	109, 205
CviAII	CATG	2 cut(s)	44, 111
CviJI	RGCY	3 cut(s)	5, 184, 205
CviKI_1	RGCY	3 cut(s)	5, 184, 205
DdeI	CTNAG	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	2 cut(s)	47, 114
FaiI	YATR	6 cut(s)	45, 53, 63, 80, 112, 176
FatI	CATG	2 cut(s)	43, 110
FokI	GGATG	2 cut(s)	116, 212
FriOI	GRGCYC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	47, 114
HphI	GGTGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	13, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	47, 114
LmnI	GCTCC	3 cut(s)	112, 181, 210
LpnPI	CCDG	4 cut(s)	86, 102, 145, 182
LweI	GCATC	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	132, 163, 172
MseI	TTAA	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	47, 114
PflMI	CCANNNNNTGG	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	2 cut(s)	186, 207
SfaNI	GCATC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	190
SstI	GAGCTC	1 cut(s)	207
TasI	AATT	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.