Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Forward (+)

2755006 .. 2755863

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTATATGCAATTGACATAAATGAAGGGTGGTTGAGAATCCTCAAAGAAATGGCTAAGTTGCACCAAGTAGATGGTGTCATCACCACTATCCATGCTGATATGCGTAGTTATACTGTAAGTTATCACCTCTATACAACATTGATCTTTGGGACTGGAAATTTCTTATGGTCCTTATCTTTTCTCCAGGACAATAATACTATGAAGTGTGATAAAGTTCTGTTGGATGCTCCATGTTCTGGACTGGGTGTTCTCTCCAAGAGGGCAGACTTGCGTTGGAACAGGAGATTAGAGGATATGGAGGAGCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

104

Amino Acids

12.03

Weight (kDa)

5.84

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	63 - 103	2.2e-10	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	186
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	76, 119
AvaII	GGWCC	1 cut(s)	171
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	188
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	160, 249
BseBI	CCWGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	160, 249
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	160, 249
BssMI	GATC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	171
CviAII	CATG	2 cut(s)	95, 234
CviJI	RGCY	2 cut(s)	56, 307
CviKI_1	RGCY	2 cut(s)	56, 307
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	98, 237
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	94, 233
FokI	GGATG	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	170
Hin1II	CATG	2 cut(s)	98, 237
HinfI	GANTC	1 cut(s)	39
HphI	GGTGA	2 cut(s)	76, 119
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	11, 64
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	98, 237
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	235, 304
LpnPI	CCDG	6 cut(s)	141, 173, 200, 225, 230, 268
LweI	GCATC	1 cut(s)	217
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	3 cut(s)	12, 160, 310
MmeI	TCCRAC	2 cut(s)	204, 257
MnlI	CCTC	5 cut(s)	53, 140, 255, 286, 295
MseI	TTAA	2 cut(s)	309, 313
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	188
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	2 cut(s)	98, 237
PacI	TTAATTAA	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	309, 313
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	2 cut(s)	132, 309
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	171
Sse9I	AATT	3 cut(s)	12, 160, 310
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	3 cut(s)	12, 160, 310
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	309, 313
Tru9I	TTAA	2 cut(s)	309, 313
TspDTI	ATGAA	2 cut(s)	39, 218
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.