Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015752

Physical Location & Seq

Genomic Coordinates Reverse (-)

62275652 .. 62276488

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG459700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTAGTTTCTGTTGTAGATCCTCAGCAGGGTGAAATCATTAGTGATTGTTGTGCTGCTCCTAGAGGAAAGACTCTTTACATGGCGTCGCTTTTGAGTGGCCAAGGTATGGTATATGCAATTGACATAAATGAAGGGTGGTTGAGAATCCTCAAAGAAATGTCTAAGTTGCACCAAGTAGATGGTGTCATCACCACCATCCATGCTGATATGCGTAGTTATACTGACAATAATACTATGAAGTGTGATAAAGTTCTGTTGGATGCTCCATGTTTTGGACTGGGTGTTCTCTCCAAGATTTTAAATCTATGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F NusB

Protein Analysis

105

Amino Acids

11.49

Weight (kDa)

5.5

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	5 - 99	2.4e-20	16S rRNA methyltransferase RsmB/F
TRM5-TYW2_MTfase	PF02475	33 - 99	3.2e-06	TRM5/TYW2 methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406341 RchiOBHm_Chr4g0425531
rosa_multiflora	Rmu_sc0017981.1_g000001 Rmu_ssc0000322.1_g000013
rosa_rugosa	Rorug02G0128500 Rorug07G0243300
rosa_samantha	Rh1AG053700 Rh2AG312200 Rh2AG473800 Rh2CG459700 Rh5AG394200 Rh5BG282700 Rh6BG030400 Rh6CG030800 Rh6DG029700 Rh6DG406500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	109, 275
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	3 cut(s)	29, 109, 275
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	44, 184
BalI	TGGCCA	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	176, 206
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 109, 275
Bse1I	ACTGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	198, 268
BseLI	CCNNNNNNNGG	3 cut(s)	29, 109, 275
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	29, 109, 275
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	24, 165
BstF5I	GGATG	2 cut(s)	198, 268
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	198, 268
CseI	GACGC	1 cut(s)	75
CviAII	CATG	3 cut(s)	82, 203, 270
CviJI	RGCY	1 cut(s)	102
CviKI_1	RGCY	1 cut(s)	102
DdeI	CTNAG	2 cut(s)	24, 165
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	3 cut(s)	85, 206, 273
FatI	CATG	3 cut(s)	81, 202, 269
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	185, 275
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	85, 206, 273
HinfI	GANTC	2 cut(s)	73, 147
HphI	GGTGA	2 cut(s)	44, 184
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	119, 172
HpyF3I	CTNAG	2 cut(s)	24, 165
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	85, 206, 273
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	64, 271
LpnPI	CCDG	2 cut(s)	14, 266
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	63
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	33, 59, 161
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	102
MunI	CAATTG	1 cut(s)	120
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	3 cut(s)	85, 206, 273
PfeI	GAWTC	1 cut(s)	147
PflMI	CCANNNNNTGG	2 cut(s)	109, 275
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	67
SetI	ASST	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	253
SgeI	CNNG	9 cut(s)	41, 75, 94, 116, 188, 215, 282, 293, 307
Sse9I	AATT	1 cut(s)	120
SspMI	CTAG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	103
TasI	AATT	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	147, 254
Van91I	CCANNNNNTGG	2 cut(s)	109, 275
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.