Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

33881655 .. 33882038

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAAGGACCACCGGACTTGGCTCCGCCGGTTTCACCTTTGCACTCTCCGATCCCATACCTTTTAGGCGGTCTAGTTACAATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGCTTGCTCATTTTGGAAGAGACATAAAGAAGACAGCAGTGCAGACAGAGATTTGGAGTCGGGTAGTGATTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACTCTACTTACTTGGCCACCCCGATTCCGGTTTGCCCTACTAAAAGTACTAGTTTTGAAGAGGAATCAGAGAAGATAAAAGGAGATGATAAGGAAGAGAACTGTGAGAAATTGAAAGAGGCAGCATCGTCAACACCAATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.72

Weight (kDa)

5.01

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AciI	CCGC	2 cut(s)	26, 69
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	2 cut(s)	225, 252
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	296, 352
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	225, 252
ApeKI	GCWGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	3 cut(s)	74, 288, 382
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmcAI	AGTACT	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	153
BsaWI	WCCGGW	2 cut(s)	13, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	227, 254
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	4 cut(s)	14, 29, 228, 266
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	227, 254
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	51, 111
BspACI	CCGC	2 cut(s)	26, 69
BspANI	GGCC	2 cut(s)	227, 254
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	2 cut(s)	51, 111
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	3 cut(s)	128, 291, 327
BstC8I	GCNNGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	54, 114
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	51, 111
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	227, 254
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	285
CspCI	CAANNNNNGTGG	1 cut(s)	35
CviJI	RGCY	6 cut(s)	23, 86, 119, 227, 254, 381
CviKI_1	RGCY	6 cut(s)	23, 86, 119, 227, 254, 381
CviQI	GTAC	1 cut(s)	285
DpnI	GATC	2 cut(s)	53, 113
DpnII	GATC	2 cut(s)	51, 111
DraI	TTTAAA	1 cut(s)	202
EaeI	YGGCCR	2 cut(s)	225, 252
Eam1104I	CTCTTC	3 cut(s)	128, 291, 327
EarI	CTCTTC	3 cut(s)	128, 291, 327
EciI	GGCGGA	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	8
FaiI	YATR	3 cut(s)	58, 141, 221
Fnu4HI	GCNGC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	74, 288, 382
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	227, 254
HapII	CCGG	4 cut(s)	14, 29, 228, 266
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	4 cut(s)	173, 185, 262, 302
HpaII	CCGG	4 cut(s)	14, 29, 228, 266
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	2 cut(s)	51, 307
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	43, 158
Kzo9I	GATC	2 cut(s)	51, 111
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	4 cut(s)	27, 42, 241, 279
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	3 cut(s)	74, 288, 382
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	53, 113
MboI	GATC	2 cut(s)	51, 111
MboII	GAAGA	5 cut(s)	145, 158, 308, 322, 344
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	1 cut(s)	347
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	292, 349
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	4 cut(s)	14, 29, 228, 266
NdeII	GATC	2 cut(s)	51, 111
NlaIV	GGNNCC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	185, 262, 302
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	8
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	51, 111
Sau96I	GGNCC	1 cut(s)	8
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	5 cut(s)	40, 63, 198, 213, 383
SfaNI	GCATC	1 cut(s)	371
SinI	GGWCC	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	2 cut(s)	26, 69
SspMI	CTAG	3 cut(s)	74, 288, 382
TaaI	ACNGT	1 cut(s)	341
TasI	AATT	1 cut(s)	347
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	3 cut(s)	185, 262, 302
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	8
XspI	CTAG	3 cut(s)	74, 288, 382
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.