RchiOBHm_Chr4g0425041

Belongs to the peptidase M18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017800
Physical Location & Seq
Reverse (-)
50704424 .. 50708354
3931 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGGTTGAGAAAGCTGAAGTTTGTATATTTGTTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAGCCTGTTTCCAAGGTAGCTAAGGGTGGGTACTTGGAAGTGGGAGTCCAAACATATGGAGGTGGCTTGTGGCATACCTGGTTCGACCGTGACTTGATAATTGCAGGAAGGGTGATGGTAAGAGAAGAGAAAGATGGTGTTGTTTCTTACTCGCATAGACTTGTCCGGATTGAGAAGCCCATCATGCGGATTCCTACTCTGGCAATTCACCTGGACAGGGATGTTAGAGAGGCATTTAAAGTGAATGCACAGAGTCACCTTCTTCCTGTCTTGGCAACAACAGTCAAGAGGGGAGGGCTATGTTGA

Protein Analysis

131

Amino Acids

14.49

Weight (kDa)

9.3

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M18 PF02127 11 - 125 1.1e-42 Aminopeptidase I zinc metalloprotease (M18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017800)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata RLG00000000804 RLG00000015399
rosa_roxburghii Rroxscaffold_2G00092620
rosa_samantha Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana Rw4G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 255
AciI CCGC 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 276, 307
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 2 cut(s) 167, 300
AluBI AGCT 2 cut(s) 14, 110
AluI AGCT 2 cut(s) 14, 110
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 214, 290, 338
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 3 cut(s) 199, 218, 278
BciT130I CCWGG 2 cut(s) 169, 302
BcoDI GTCTC 1 cut(s) 86
Bme1390I CCNGG 2 cut(s) 169, 302
BmrFI CCNGG 2 cut(s) 169, 302
Bpu10I CCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 307
BseAI TCCGGA 1 cut(s) 255
BseBI CCWGG 2 cut(s) 169, 302
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 276, 307
Bsh1285I CGRYCG 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 2 cut(s) 36, 256
BslI CCNNNNNNNGG 2 cut(s) 276, 307
BsmAI GTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 255
BspACI CCGC 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 2 cut(s) 169, 302
Bst4CI ACNGT 2 cut(s) 179, 373
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 86
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNI CCWGG 2 cut(s) 169, 302
BstSCI CCNGG 2 cut(s) 167, 300
BstXI CCANNNNNNTGG 2 cut(s) 56, 146
BtsCI GGATG 1 cut(s) 316
CsiI ACCWGGT 1 cut(s) 167
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 274
CviJI RGCY 6 cut(s) 14, 94, 110, 156, 268, 388
CviKI_1 RGCY 6 cut(s) 14, 94, 110, 156, 268, 388
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 111
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 167, 300
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 277
FatI CATG 1 cut(s) 273
FauNDI CATATG 1 cut(s) 145
FokI GGATG 1 cut(s) 323
HapII CCGG 2 cut(s) 36, 256
Hin1II CATG 1 cut(s) 277
HinfI GANTC 4 cut(s) 45, 135, 280, 343
HpaII CCGG 2 cut(s) 36, 256
HphI GGTGA 3 cut(s) 214, 290, 338
Hpy188III TCNNGA 2 cut(s) 256, 376
HpyAV CCTTC 2 cut(s) 192, 359
HpyCH4III ACNGT 2 cut(s) 179, 373
HpyCH4V TGCA 2 cut(s) 194, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 255
MabI ACCWGGT 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 179, 344
MboII GAAGA 2 cut(s) 227, 344
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 86, 189, 294
MlyI GAGTC 2 cut(s) 144, 352
MnlI CCTC 4 cut(s) 143, 313, 372, 377
MroI TCCGGA 1 cut(s) 255
MseI TTAA 1 cut(s) 327
MspI CCGG 2 cut(s) 36, 256
MspR9I CCNGG 2 cut(s) 169, 302
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 2 cut(s) 169, 302
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeI CATATG 1 cut(s) 145
NlaIII CATG 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 179, 344
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 45, 280
PleI GAGTC 2 cut(s) 143, 351
PpsI GAGTC 2 cut(s) 143, 351
Psp6I CCWGG 2 cut(s) 167, 300
PspGI CCWGG 2 cut(s) 167, 300
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 327
SchI GAGTC 2 cut(s) 144, 352
ScrFI CCNGG 2 cut(s) 169, 302
SduI GDGCHC 1 cut(s) 64
SetI ASST 7 cut(s) 16, 108, 112, 154, 170, 303, 351
SexAI ACCWGGT 1 cut(s) 167
Sse9I AATT 3 cut(s) 86, 189, 294
SsiI CCGC 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 167, 300
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 179, 373
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 86, 189, 294
TfiI GAWTC 2 cut(s) 45, 280
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseFI GTSAC 2 cut(s) 179, 344
Tsp45I GTSAC 2 cut(s) 179, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.