Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017800

Physical Location & Seq

Genomic Coordinates Forward (+)

7079767 .. 7088714

Gene Structure 8948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG034400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAACTATTTACATGGACGGTTAGGATTAGAGAGGGAGAGACAGACGAGGCAAAGAAGAGTCTGCAAAGCGCGGGGTATGAGCAGGTTTTCGAGATAGAGGATTGGAAATTGGAGGCTGGTAAAAAGTACTACTTCACCAGGAACTACTCCACCATTGTGGCTTTTGCAATCGGTAAAAAATTTATTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAGCCTGTTTCCAAGGTAGCTAAGGGTGGGTACTTGGAAGTGGGAGTCCAAACATATGGAGGTGGCTTGTGGCATACCTGGTTCGACCGTGACTTGACAATTGTAGGAAGGATGATAGTAAGAGAAGAGAAAGATGGTGTTGTTTCTTACTCACATAGACTTGTCCGGATTGAGGAGCCCATCATGCGGATTCCTACTCTGGCAATTCACCTGGACAGGGATGTTAGAGAGGTGTTTAAGGTGAATGCACAGAGTCACCTTCTTCCTGTCTTGGCAACAACAGTCAAGGTAATCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

181

Amino Acids

20.58

Weight (kDa)

9.25

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	16 - 176	5.2e-57	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017800)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata	RLG00000000804 RLG00000015399
rosa_roxburghii	Rroxscaffold_2G00092620
rosa_samantha	Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana	Rw4G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccII	CGCG	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	411
AciI	CCGC	2 cut(s)	74, 433
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	2 cut(s)	131, 278
AfiI	CCNNNNNNNGG	3 cut(s)	418, 432, 463
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	140, 323, 456
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	35, 242
Aor13HI	TCCGGA	1 cut(s)	411
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	130, 446, 494, 499
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	220
BccI	CCATC	2 cut(s)	374, 434
BciT130I	CCWGG	3 cut(s)	142, 325, 458
BcoDI	GTCTC	2 cut(s)	35, 242
BfuAI	ACCTGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	131
Bme1390I	CCNGG	3 cut(s)	142, 325, 458
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	3 cut(s)	142, 325, 458
Bpu10I	CCTNAGC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 432, 463
BseAI	TCCGGA	1 cut(s)	411
BseBI	CCWGG	3 cut(s)	142, 325, 458
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	363, 472
BseLI	CCNNNNNNNGG	3 cut(s)	418, 432, 463
BseRI	GAGGAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	192, 412
BslI	CCNNNNNNNGG	3 cut(s)	418, 432, 463
BsmAI	GTCTC	2 cut(s)	35, 242
BsmI	GAATGC	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	220, 426
Bsp13I	TCCGGA	1 cut(s)	411
BspACI	CCGC	2 cut(s)	74, 433
BspEI	TCCGGA	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	3 cut(s)	142, 325, 458
Bst4CI	ACNGT	3 cut(s)	22, 335, 529
Bst6I	CTCTTC	2 cut(s)	53, 366
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	363, 472
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	74
BstMAI	GTCTC	2 cut(s)	35, 242
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	3 cut(s)	142, 325, 458
BstSCI	CCNGG	3 cut(s)	140, 323, 456
BstUI	CGCG	1 cut(s)	74
BstXI	CCANNNNNNTGG	3 cut(s)	160, 212, 302
BtsCI	GGATG	2 cut(s)	363, 472
BveI	ACCTGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	130, 277
CviAII	CATG	2 cut(s)	15, 430
CviJI	RGCY	6 cut(s)	119, 164, 250, 266, 312, 424
CviKI_1	RGCY	6 cut(s)	119, 164, 250, 266, 312, 424
CviQI	GTAC	2 cut(s)	130, 277
DdeI	CTNAG	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	53, 366
EarI	CTCTTC	2 cut(s)	53, 366
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	426
EcoRII	CCWGG	3 cut(s)	140, 323, 456
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	18, 433
FalI	AAGNNNNNCTT	3 cut(s)	119, 151, 524
FatI	CATG	2 cut(s)	14, 429
FauI	CCCGC	1 cut(s)	67
FauNDI	CATATG	1 cut(s)	301
FokI	GGATG	2 cut(s)	370, 479
FriOI	GRGCYC	1 cut(s)	426
GlaI	GCGC	1 cut(s)	73
HapII	CCGG	2 cut(s)	192, 412
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	18, 433
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	5 cut(s)	61, 201, 291, 436, 499
HpaII	CCGG	2 cut(s)	192, 412
HphI	GGTGA	4 cut(s)	130, 446, 494, 499
Hpy188III	TCNNGA	2 cut(s)	94, 412
HpyAV	CCTTC	2 cut(s)	348, 515
HpyCH4III	ACNGT	3 cut(s)	22, 335, 529
HpyCH4V	TGCA	3 cut(s)	67, 170, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	18, 433
HspAI	GCGC	1 cut(s)	72
Kpn2I	TCCGGA	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	421
MabI	ACCWGGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	335, 500
MboII	GAAGA	3 cut(s)	70, 383, 500
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	220, 426
MluCI	AATT	5 cut(s)	110, 182, 242, 345, 450
MlyI	GAGTC	3 cut(s)	70, 300, 508
MnlI	CCTC	7 cut(s)	28, 43, 94, 109, 299, 412, 469
MroI	TCCGGA	1 cut(s)	411
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	2 cut(s)	192, 412
MspR9I	CCNGG	3 cut(s)	142, 325, 458
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	3 cut(s)	142, 325, 458
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeI	CATATG	1 cut(s)	301
NlaIII	CATG	2 cut(s)	18, 433
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	335, 500
OliI	CACNNNNGTG	1 cut(s)	158
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	201, 436
PleI	GAGTC	3 cut(s)	69, 299, 507
PpsI	GAGTC	3 cut(s)	69, 299, 507
Psp6I	CCWGG	3 cut(s)	140, 323, 456
PspGI	CCWGG	3 cut(s)	140, 323, 456
PspN4I	GGNNCC	1 cut(s)	423
RsaI	GTAC	2 cut(s)	131, 278
RsaNI	GTAC	2 cut(s)	130, 277
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	483
ScaI	AGTACT	1 cut(s)	131
SchI	GAGTC	3 cut(s)	70, 300, 508
ScrFI	CCNGG	3 cut(s)	142, 325, 458
SduI	GDGCHC	2 cut(s)	220, 426
SexAI	ACCWGGT	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	5 cut(s)	110, 182, 242, 345, 450
SsiI	CCGC	2 cut(s)	74, 433
StyD4I	CCNGG	3 cut(s)	140, 323, 456
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	22, 335, 529
TaqI	TCGA	2 cut(s)	93, 330
TasI	AATT	5 cut(s)	110, 182, 242, 345, 450
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	201, 436
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	335, 500
Tsp45I	GTSAC	2 cut(s)	335, 500
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.