Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017800

Physical Location & Seq

Genomic Coordinates Forward (+)

2281150 .. 2283931

Gene Structure 2782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACAAAAAATTCAGATATCTTGGAGCATCAGGATTCAGACGAGGCGGAGAAGCGTCTGCAAAGCGCGGGGTACGAGCAGGTTTTGGAGAGAGAGGATTGGAAATTGGAGGCTGGTAAAAAGTACTACTTCACCAGGAACTACTCCACCATTGTGGCTTTTGCAATCGGTAAAAAATTTGTTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAGTCTGTTTCCAAGGTAGCTAAGGGTGGGTACTTGGAAGTGGGAGTCCAAACATATGGAGACTTGTCCGGATTGAGGAGCCCAATTCCTACTCTGGCAATTCACCTGGACAGGGAATCTTGCTGCGCAATTTATTATTCACATGTTTGGGTTGTTGAGTGGAGGAGAGGGCTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

139

Amino Acids

15.65

Weight (kDa)

7.68

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	14 - 101	2.5e-28	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017800)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata	RLG00000000804 RLG00000015399
rosa_roxburghii	Rroxscaffold_2G00092620
rosa_samantha	Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana	Rw4G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	70
AccII	CGCG	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	2 cut(s)	47, 68
AcsI	RAATTY	2 cut(s)	10, 176
AfaI	GTAC	3 cut(s)	74, 125, 272
AfiI	CCNNNNNNNGG	2 cut(s)	315, 352
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	134, 345
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	236, 294
Aor13HI	TCCGGA	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	2 cut(s)	10, 176
AspLEI	GCGC	2 cut(s)	68, 368
AsuHPI	GGTGA	2 cut(s)	124, 335
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	136, 347
BcoDI	GTCTC	2 cut(s)	236, 294
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	136, 347
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	2 cut(s)	136, 347
BmsI	GCATC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 352
BseAI	TCCGGA	1 cut(s)	308
BseBI	CCWGG	2 cut(s)	136, 347
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	315, 352
BseRI	GAGGAG	2 cut(s)	331, 418
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	186, 309
BslI	CCNNNNNNNGG	2 cut(s)	315, 352
BsmAI	GTCTC	2 cut(s)	236, 294
Bsp1286I	GDGCHC	2 cut(s)	214, 323
Bsp13I	TCCGGA	1 cut(s)	308
BspACI	CCGC	2 cut(s)	47, 68
BspEI	TCCGGA	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	320
BspMI	ACCTGC	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	136, 347
BstDEI	CTNAG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	68, 368
BstMAI	GTCTC	2 cut(s)	236, 294
BstNI	CCWGG	2 cut(s)	136, 347
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	134, 345
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	350
BstXI	CCANNNNNNTGG	3 cut(s)	154, 206, 296
BveI	ACCTGC	1 cut(s)	70
CfoI	GCGC	2 cut(s)	68, 368
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	73, 124, 271
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	5 cut(s)	113, 158, 260, 321, 412
CviKI_1	RGCY	5 cut(s)	113, 158, 260, 321, 412
CviQI	GTAC	3 cut(s)	73, 124, 271
DdeI	CTNAG	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	134, 345
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	386
FaiI	YATR	7 cut(s)	201, 203, 216, 295, 297, 384, 415
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	1 cut(s)	382
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	364
FspI	TGCGCA	1 cut(s)	367
GlaI	GCGC	2 cut(s)	67, 367
GluI	GCNGC	1 cut(s)	364
HapII	CCGG	2 cut(s)	186, 309
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	68, 368
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	2 cut(s)	66, 366
HinP1I	GCGC	2 cut(s)	66, 366
HinfI	GANTC	4 cut(s)	35, 195, 285, 356
HpaII	CCGG	2 cut(s)	186, 309
HphI	GGTGA	2 cut(s)	124, 335
Hpy188I	TCNGA	2 cut(s)	16, 40
Hpy188III	TCNNGA	2 cut(s)	32, 309
HpyCH4V	TGCA	2 cut(s)	61, 164
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	2 cut(s)	66, 366
Kpn2I	TCCGGA	1 cut(s)	308
LmnI	GCTCC	2 cut(s)	25, 318
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	214, 323
MluCI	AATT	7 cut(s)	10, 104, 176, 236, 324, 339, 369
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	37, 88, 103, 309, 396, 401
MroI	TCCGGA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	2 cut(s)	186, 309
MspR9I	CCNGG	2 cut(s)	136, 347
MvaI	CCWGG	2 cut(s)	136, 347
MvnI	CGCG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	295
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	320
NsbI	TGCGCA	1 cut(s)	367
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	152
PciI	ACATGT	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	35, 195, 356
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PscI	ACATGT	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	134, 345
PspGI	CCWGG	2 cut(s)	134, 345
PspN4I	GGNNCC	1 cut(s)	320
RsaI	GTAC	3 cut(s)	74, 125, 272
RsaNI	GTAC	3 cut(s)	73, 124, 271
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	1 cut(s)	364
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	2 cut(s)	136, 347
SduI	GDGCHC	2 cut(s)	214, 323
SetI	ASST	4 cut(s)	84, 258, 262, 348
SfaNI	GCATC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	7 cut(s)	10, 104, 176, 236, 324, 339, 369
SsiI	CCGC	2 cut(s)	47, 68
StyD4I	CCNGG	2 cut(s)	134, 345
StyI	CCWWGG	1 cut(s)	252
TasI	AATT	7 cut(s)	10, 104, 176, 236, 324, 339, 369
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	3 cut(s)	35, 195, 356
TseI	GCWGC	1 cut(s)	363
XapI	RAATTY	2 cut(s)	10, 176
XceI	RCATGY	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.