Rh7CG458700

Belongs to the peptidase M18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017800
Physical Location & Seq
Reverse (-)
60467444 .. 60469225
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG458700.1

Sequence Viewer

Length: 594 bp
ATGTTCATGTATGGGAGAGGATCCTCTCCTAACCTTCTAATCCACCTAACCTACCTAAGCTTTCAACACCAAACTGACATGTGGCCAAACTTGCATCCAATGGCCTACAATAAACTTACATCCAAGTGCCGTCGGCAAATTCCCACTCCACCACACTCTCTCTCTTTTTTCCTCCATTTTCGAAGAGATCGTGATCGCGCTTTCCACCTTATCGACGAGGCGAAGAAGCGTCTGCAAAGAGCGGGGTACGAGCAGGTTTTGGAGAGAGAGGATTGGAAATTGGAGGCTGGTAAAAAGTACTACTTCACCAGGAACTACTCCACCATTGTGGCTTTTGCAATTGGTAAAAAATTTGTTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAGCCTGTTTCCGAGGTAGCTAAGGGTAGGTACTTGGAAGTGGGAGTCCAAACATATGGAGATGGCTTGTGGCATACCTGGTTCGACCGTGACTTGACAATTGCAGGAAGGGTGATAGTAAGAGAAGAGAAAGATGGTGTTGTTTCTTACTCTGGCAATTCACCTGGACAGGGATGTTAG

Protein Analysis

197

Amino Acids

22.69

Weight (kDa)

9.51

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M18 PF02127 67 - 183 1.1e-43 Aminopeptidase I zinc metalloprotease (M18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017800)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata RLG00000000804 RLG00000015399
rosa_roxburghii Rroxscaffold_2G00092620
rosa_samantha Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana Rw4G022290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccBSI CCGCTC 1 cut(s) 242
AccII CGCG 1 cut(s) 198
AciI CCGC 1 cut(s) 242
AclWI GGATC 2 cut(s) 15, 28
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 2 cut(s) 138, 350
AfaI GTAC 3 cut(s) 248, 299, 446
AfiI CCNNNNNNNGG 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 2 cut(s) 65, 415
AjnI CCWGG 3 cut(s) 308, 491, 577
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 2 cut(s) 60, 434
AluI AGCT 2 cut(s) 60, 434
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 15, 28
AoxI GGCC 2 cut(s) 83, 102
ApoI RAATTY 2 cut(s) 138, 350
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 298, 538, 567
AsuII TTCGAA 1 cut(s) 181
BalI TGGCCA 1 cut(s) 85
BamHI GGATCC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 2 cut(s) 470, 542
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 3 cut(s) 310, 493, 579
BcoDI GTCTC 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 244
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 3 cut(s) 310, 493, 579
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 3 cut(s) 310, 493, 579
BmsI GCATC 1 cut(s) 103
Bpu10I CCTNAGC 2 cut(s) 56, 435
Bpu14I TTCGAA 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 426
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 3 cut(s) 310, 493, 579
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 3 cut(s) 94, 119, 593
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 2 cut(s) 85, 104
BsiEI CGRYCG 1 cut(s) 502
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 410
BsnI GGCC 2 cut(s) 85, 104
Bsp119I TTCGAA 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 3 cut(s) 20, 187, 193
BspACI CCGC 1 cut(s) 242
BspANI GGCC 2 cut(s) 85, 104
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 2 cut(s) 15, 28
BspT104I TTCGAA 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 3 cut(s) 20, 187, 193
Bst2UI CCWGG 3 cut(s) 310, 493, 579
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 2 cut(s) 178, 534
BstBI TTCGAA 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 56, 435
BstF5I GGATG 3 cut(s) 94, 119, 593
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 3 cut(s) 23, 190, 196
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 20, 187, 193
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 3 cut(s) 310, 493, 579
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 3 cut(s) 308, 491, 577
BstUI CGCG 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 20
BstXI CCANNNNNNTGG 3 cut(s) 328, 380, 470
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 2 cut(s) 85, 104
BtsCI GGATG 3 cut(s) 94, 119, 593
BveI ACCTGC 1 cut(s) 244
CfoI GCGC 1 cut(s) 200
CseI GACGC 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 491
Csp6I GTAC 3 cut(s) 247, 298, 445
CviAII CATG 2 cut(s) 7, 79
CviJI RGCY 8 cut(s) 60, 85, 104, 287, 332, 418, 434, 480
CviKI_1 RGCY 8 cut(s) 60, 85, 104, 287, 332, 418, 434, 480
CviQI GTAC 3 cut(s) 247, 298, 445
DdeI CTNAG 2 cut(s) 56, 435
DpnI GATC 3 cut(s) 22, 189, 195
DpnII GATC 3 cut(s) 20, 187, 193
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 2 cut(s) 178, 534
EarI CTCTTC 2 cut(s) 178, 534
EcoRII CCWGG 3 cut(s) 308, 491, 577
FaeI CATG 2 cut(s) 10, 82
FaiI YATR 9 cut(s) 8, 12, 80, 375, 377, 390, 469, 471, 489
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 2 cut(s) 6, 78
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 1 cut(s) 469
FokI GGATG 2 cut(s) 81, 106
GlaI GCGC 1 cut(s) 199
HaeIII GGCC 2 cut(s) 85, 104
HapII CCGG 1 cut(s) 360
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 10, 82
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 2 cut(s) 369, 459
HpaII CCGG 1 cut(s) 360
HphI GGTGA 3 cut(s) 298, 538, 567
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 1 cut(s) 191
Hpy99I CGWCG 2 cut(s) 135, 218
HpyAV CCTTC 2 cut(s) 44, 516
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4V TGCA 4 cut(s) 94, 235, 338, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 2 cut(s) 56, 435
Hsp92II CATG 2 cut(s) 10, 82
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 20, 187, 193
LweI GCATC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 503
MalI GATC 3 cut(s) 22, 189, 195
MbiI CCGCTC 1 cut(s) 242
MboI GATC 3 cut(s) 20, 187, 193
MboII GAAGA 3 cut(s) 195, 235, 551
MfeI CAATTG 2 cut(s) 339, 513
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 7 cut(s) 138, 278, 339, 350, 410, 513, 571
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 1 cut(s) 468
MnlI CCTC 7 cut(s) 11, 34, 182, 211, 262, 277, 421
Mox20I TGGCCA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 85
MslI CAYNNNNRTG 2 cut(s) 124, 326
Msp20I TGGCCA 1 cut(s) 85
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 3 cut(s) 310, 493, 579
MunI CAATTG 2 cut(s) 339, 513
MvaI CCWGG 3 cut(s) 310, 493, 579
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeI CATATG 1 cut(s) 469
NdeII GATC 3 cut(s) 20, 187, 193
NlaIII CATG 2 cut(s) 10, 82
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 503
NspI RCATGY 1 cut(s) 82
NspV TTCGAA 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 326
PciI ACATGT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 1 cut(s) 369
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PscI ACATGT 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 308, 491, 577
PspGI CCWGG 3 cut(s) 308, 491, 577
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 3 cut(s) 248, 299, 446
RsaNI GTAC 3 cut(s) 247, 298, 445
RseI CAYNNNNRTG 2 cut(s) 124, 326
Sau3AI GATC 3 cut(s) 20, 187, 193
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 3 cut(s) 310, 493, 579
SduI GDGCHC 1 cut(s) 388
SexAI ACCWGGT 1 cut(s) 491
SfaNI GCATC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 124, 326
Sse9I AATT 7 cut(s) 138, 278, 339, 350, 410, 513, 571
SsiI CCGC 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 308, 491, 577
TaaI ACNGT 1 cut(s) 503
TaqI TCGA 3 cut(s) 181, 213, 498
TasI AATT 7 cut(s) 138, 278, 339, 350, 410, 513, 571
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 369
TseFI GTSAC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 503
XapI RAATTY 2 cut(s) 138, 350
XceI RCATGY 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.