Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017800

Physical Location & Seq

Genomic Coordinates Forward (+)

2325430 .. 2326736

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAAACGGGGCGGAGAAGCGTCTGCAAAGCGCGGGGTACGAGCAGGTTTTGGAGAGAGAGGATTGGAAATTGGAGGCTGGTAAAAAGTACTACTTCACCAGGAACTACTCCACCATTGTGGCTTTTGCAATCGGTAAAAAATTTGTTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAGTCTGTTTCCAAGGTAGCTAAGGGTGGGTACTTGGAAGTGGGAGTCCAAACATATGGAGGTGGCTTGTGGCATACCTGGTACAACCGTGACTTGACAATTGCAGGAAGGGTGATAGTAAGAGAAGAGAAAGATGGTGTTGTTTCTTACTCACATAGACTTGTCCGGATTGAGGAGCCCAATTCCTACTCTGGAGGAGAGGGCTATGTTGATTCTGCAAACCTTAAGAGGCTAGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

149

Amino Acids

16.6

Weight (kDa)

9.0

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	5 - 129	1.4e-42	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017800)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata	RLG00000000804 RLG00000015399
rosa_roxburghii	Rroxscaffold_2G00092620
rosa_samantha	Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana	Rw4G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AccII	CGCG	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	2 cut(s)	14, 35
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	4 cut(s)	41, 92, 239, 290
AfiI	CCNNNNNNNGG	1 cut(s)	379
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	101, 284
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	91, 331
BaeI	ACNNNNGTAYC	2 cut(s)	280, 313
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	2 cut(s)	103, 286
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	103, 286
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	103, 286
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
BseAI	TCCGGA	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	103, 286
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseRI	GAGGAG	2 cut(s)	395, 417
BseXI	GCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	153, 373
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	181, 387
Bsp13I	TCCGGA	1 cut(s)	372
BspACI	CCGC	2 cut(s)	14, 35
BspEI	TCCGGA	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	384
BspMI	ACCTGC	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	103, 286
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	431
BstDEI	CTNAG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	103, 286
BstSCI	CCNGG	2 cut(s)	101, 284
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	431
BstXI	CCANNNNNNTGG	3 cut(s)	121, 173, 263
BveI	ACCTGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	35
CseI	GACGC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	284
Csp6I	GTAC	4 cut(s)	40, 91, 238, 289
CviJI	RGCY	8 cut(s)	80, 125, 227, 273, 385, 411, 439, 444
CviKI_1	RGCY	8 cut(s)	80, 125, 227, 273, 385, 411, 439, 444
CviQI	GTAC	4 cut(s)	40, 91, 238, 289
DdeI	CTNAG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	101, 284
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	219
FaiI	YATR	8 cut(s)	168, 170, 183, 262, 264, 282, 363, 414
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FauI	CCCGC	1 cut(s)	28
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	445
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	420
HapII	CCGG	2 cut(s)	153, 373
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	162, 252, 419
HpaII	CCGG	2 cut(s)	153, 373
HphI	GGTGA	2 cut(s)	91, 331
Hpy188III	TCNNGA	2 cut(s)	373, 399
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	28, 131, 311, 425
HpyF3I	CTNAG	1 cut(s)	228
HspAI	GCGC	1 cut(s)	33
Kpn2I	TCCGGA	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	1 cut(s)	431
MabI	ACCWGGT	1 cut(s)	284
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	296
MboII	GAAGA	1 cut(s)	344
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	181, 387
MluCI	AATT	5 cut(s)	71, 143, 203, 306, 388
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	7 cut(s)	55, 70, 260, 373, 395, 400, 429
MroI	TCCGGA	1 cut(s)	372
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	2 cut(s)	153, 373
MspR9I	CCNGG	2 cut(s)	103, 286
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	103, 286
MvnI	CGCG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	162, 419
PkrI	GCNGC	1 cut(s)	446
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	101, 284
PspGI	CCWGG	2 cut(s)	101, 284
PspN4I	GGNNCC	1 cut(s)	384
RsaI	GTAC	4 cut(s)	41, 92, 239, 290
RsaNI	GTAC	4 cut(s)	40, 91, 238, 289
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	103, 286
SduI	GDGCHC	2 cut(s)	181, 387
SetI	ASST	6 cut(s)	51, 225, 229, 271, 287, 432
SexAI	ACCWGGT	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	5 cut(s)	71, 143, 203, 306, 388
SsiI	CCGC	2 cut(s)	14, 35
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	101, 284
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	296
TasI	AATT	5 cut(s)	71, 143, 203, 306, 388
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	162, 419
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.