Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017800

Physical Location & Seq

Genomic Coordinates Reverse (-)

14167460 .. 14168642

Gene Structure 1183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTGCGGATGCCGTATGGAAGTCTCTCTCCCGACAATAATAGCGAAGAAGCGTACGCAAAGCGCGGGTACGAGCAGGTTTTGGAGAGAGAGGATTGGAAATTGGAGGCTAGTAAAAAGTACCACTTCACCAAGAACTACTCCACCTTTGTGGCTTTTGCAATCGGTAAAAAATTTGTTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACCGATAGTCCTTGTCTCAAATTGAAGCCTGTTTCCATGGAAAGAGGGCTAATTTTGCAATGTAAAATCAAAAAGTGCTTCCATTTGCATATTTGCCTAGAATGGAAGGGCGTGAACACCGACCTGCAGCTTCAAGATGCAGATCCCCAAATTCGAGGGATGAAGAATAAGCCCGGATACGAGAAAAAATTCAGCCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

138

Amino Acids

15.86

Weight (kDa)

9.33

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	14 - 85	1.4e-20	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017800)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata	RLG00000000804 RLG00000015399
rosa_roxburghii	Rroxscaffold_2G00092620
rosa_samantha	Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana	Rw4G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	67, 345
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	7, 66
AclWI	GGATC	1 cut(s)	350
AcsI	RAATTY	3 cut(s)	173, 363, 401
AfaI	GTAC	3 cut(s)	56, 71, 122
AgsI	TTSAA	2 cut(s)	238, 347
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	29, 233
AlwI	GGATC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	3 cut(s)	173, 363, 401
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	352
BciVI	GTATCC	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	2 cut(s)	29, 233
BfaI	CTAG	2 cut(s)	111, 311
BfmI	CTRYAG	1 cut(s)	338
BfuAI	ACCTGC	2 cut(s)	67, 345
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	2 cut(s)	15, 378
BseJI	GATNNNNATC	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	183, 387
BsiWI	CGTACG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	29, 233
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	2 cut(s)	7, 66
BspFNI	CGCG	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	2 cut(s)	67, 345
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	15, 378
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	2 cut(s)	29, 233
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	338
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	2 cut(s)	151, 203
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	15, 378
BveI	ACCTGC	2 cut(s)	67, 345
CfoI	GCGC	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	55, 70, 121
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	7 cut(s)	110, 155, 241, 262, 343, 385, 408
CviKI_1	RGCY	7 cut(s)	110, 155, 241, 262, 343, 385, 408
CviQI	GTAC	3 cut(s)	55, 70, 121
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	253
FaiI	YATR	6 cut(s)	18, 198, 200, 213, 251, 303
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	22, 385
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	111, 311
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	341
HapII	CCGG	2 cut(s)	183, 387
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	2 cut(s)	183, 387
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	32, 347
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	5 cut(s)	161, 271, 301, 340, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	62, 196, 255, 350, 400
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	111, 311
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	2 cut(s)	59, 388
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	6 cut(s)	101, 173, 233, 264, 363, 401
MnlI	CCTC	4 cut(s)	85, 100, 251, 362
MroXI	GAANNNNTTC	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	2 cut(s)	183, 387
MspR9I	CCNGG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	253
OliI	CACNNNNGTG	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	192
Pfl23II	CGTACG	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	342
PspLI	CGTACG	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	3 cut(s)	56, 71, 122
RsaNI	GTAC	3 cut(s)	55, 70, 121
RseI	CAYNNNNRTG	1 cut(s)	149
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	4 cut(s)	81, 149, 339, 345
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	6 cut(s)	101, 173, 233, 264, 363, 401
SsiI	CCGC	2 cut(s)	7, 66
SspMI	CTAG	2 cut(s)	111, 311
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	249
TaqI	TCGA	1 cut(s)	367
TasI	AATT	6 cut(s)	101, 173, 233, 264, 363, 401
TfiI	GAWTC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	389
XapI	RAATTY	3 cut(s)	173, 363, 401
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	2 cut(s)	111, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.